Job Description P77704 Confidence 68.76% Date Thu Jan 5 12:31:54 GMT 2012 Rank 316 Aligned Residues 139 % Identity 16% Template c3ddmD_ PDB info PDB header:lyase Chain: D: PDB Molecule:putative mandelate racemase/muconate lactonizing PDBTitle: crystal structure of mandelate racemase/muconate2 lactonizing enzyme from bordetella bronchiseptica rb50 Resolution 2.60 Å

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		62	.	.	.	.	.	.	.	70	.	.	.	.	.															.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	H	M	M	V	S	M	A	Q	K	A	T	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	T	H	W	D	H	G	R	S	M	E	I	I	H	N	A	W	T	H	G	M	N	S	L	M	R	D	A	S	A	F	D	F	E	E	N	I	R	L	T	K	E	A	V	D	F	F	H	P	L	G
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.																	.	.	.	.
Template Conservation																																																													.																	.	.	.	.
Template Sequence		I	A	L	C	D	L	A	A	R	R	A	G	Q	P	L	W	A	W	L	G	G	S	G	D	R	I	G	V	Y	A	S	G	I	N	P	E	N	P	E	D	V	V	A	R	K	A	A	E	G	Y	R	A	F	K	L	K	V	G	F	.	D	D	A	R	D	V	R	N	A	L	H	V	R	E	L	L	.	.	.	.
Template Known Secondary structure													T		B					T	T		S													S	S													T									S	S	.																	.	.	.	.
Template Predicted Secondary structure																																																													.																	.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		I	P	V	E	A	E	L	G	H	V	G	N	E	T	V	Y	E	E	A	L	A	G	Y	H	Y	T	D	P	D	Q	A	A	E	F	V	E	.	.	.	R	T	G	C	D	S	L	A	V	A	I	G	N	Q	H	G	V	Y	T	S	E	P	Q	L	N	F	E	V	V	K	R	V	R	D	A	V	S	V	P	L	V
Query Conservation																																						.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.															.											.	.	.									.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.															.																						.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	G	A	A	T	P	L	M	A	D	A	N	Q	G	W	.	D	L	P	R	A	R	Q	M	A	Q	R	L	G	P	A	Q	L	D	W	L	E	.	.	.	.	.	.	.	.	.	E	P	L	R	A	D	R	P	A	A	E	W	A	E	L	A	Q	A	A	P	M	P	L	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.		S	S	S							T	T			.													G	G	G							.	.	.	.	.	.	.	.	.			S		T	T	S													S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.															.																						.	.	.	.	.	.	.	.	.
Template SS confidence
													197	.	.	200	.	.	.	.	.	.	.	.	.	210		.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.										.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	G	A	S	G	I	S	D	A	D	I	K	T	A	I	S	L	G	I	A	K	I
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		G	.	G	E	N	I	A	G	V	A	A	F	E	T	A	L	A	A	R	S	L	R	V
Template Known Secondary structure			.		T	T			S											T
Template Predicted Secondary structure			.
Template SS confidence
		256		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions