Job Description P77704 Confidence 90.46% Date Thu Jan 5 12:31:54 GMT 2012 Rank 198 Aligned Residues 145 % Identity 14% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.					.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.												.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.																		.
Query SS confidence																				.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.																		.
Query Sequence		P	V	I	T	H	W	D	H	G	R	S	M	E	I	I	H	N	A	.	.	.	.	W	T	H	G	M	N	S	L	M	R	D	A	S	A	F	D	.	.	.	.	.	.	.	.	.	.	.	F	E	E	N	I	R	L	T	K	E	A	V	D	F	F	H	P	.	L	G	I	P	V	E	A	E	L	G	H	V	G
Query Conservation																				.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.																		.
Alig confidence								.												.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.																		.										.
Template Conservation								.																																																																						.
Template Sequence		P	I	A	L	Q	L	.	A	G	S	D	P	K	S	L	A	E	A	A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K	X	.	R	L	G
Template Known Secondary structure		S						.			S															T	T		S										S							T		G	G	G	G	G	G														T	T		S	S							.		S
Template Predicted Secondary structure								.																																																																						.
Template SS confidence
		59	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.		.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.				.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.						.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.																							.	.	.	.	.																.
Query SS confidence																										.	.	.																							.	.	.	.	.																.
Query Sequence		N	E	T	V	Y	E	E	A	L	A	G	Y	H	Y	T	D	P	D	Q	A	A	E	F	V	.	.	.	E	R	T	G	C	D	S	L	A	V	A	I	G	N	Q	H	G	V	Y	T	S	E	.	.	.	.	.	P	Q	L	N	F	E	V	V	K	R	V	R	D	A	V	.	S	V	P	L	V	L	H	G	A	S
Query Conservation																										.	.	.																							.	.	.	.	.																.
Alig confidence						.	.	.	.	.	.	.	.	.	.											.	.	.																							.	.	.	.	.																.
Template Conservation						.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	G	K	.	.	.	.	.	.	.	.	.	.	E	T	Y	R	G	L	A	Q	S	V	E	A	X	A	E	A	G	V	K	V	F	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I
Template Known Secondary structure		B	T	T		.	.	.	.	.	.	.	.	.	.																T	T									S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.
Template SS confidence
		137	.	.	140											.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	I	S	D	A	D	I	K	T	A	I	S	L	G	I	A	K	I	N	I	H	T	E	L
Query Conservation
Alig confidence												.	.
Template Conservation												.	.
Template Sequence		R	S	L	E	E	A	L	F	H	L	.	.	K	R	V	D	G	V	X	L	G	R	A	V
Template Known Secondary structure			S									.	.	T	T	S	S					S
Template Predicted Secondary structure												.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.			.	.	.	220	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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