Job Description P77704 Confidence 97.57% Date Thu Jan 5 12:31:54 GMT 2012 Rank 50 Aligned Residues 217 % Identity 17% Template c2ftpA_ PDB info PDB header:lyase Chain: A: PDB Molecule:hydroxymethylglutaryl-coa lyase; PDBTitle: crystal structure of hydroxymethylglutaryl-coa lyase from pseudomonas2 aeruginosa Resolution 2.40 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		W	N	A	E	M	L	M	G	V	I	D	A	A	E	E	A	K	S	P	V	I	I	S	F	G	T	G	F	V	G	N	T	S	.	F	E	D	F	S	H	M	M	V	S	M	A	Q	K	A	T	V	P	V	I	T	H	W	D	H	G	R	S	M	E	I	I	H	N	A	W	T	H	G	M	N	S	L	M	R	D
Query Conservation																																			.
Alig confidence																																			.																							.	.	.
Template Conservation																																																										.	.	.
Template Sequence		I	E	V	A	D	K	I	R	L	V	D	D	L	S	A	A	G	L	D	Y	I	E	V	G	S	F	V	S	P	K	W	V	P	Q	M	A	G	S	A	E	V	F	A	G	I	R	Q	R	P	G	V	T	Y	A	A	L	.	.	.	A	P	N	L	K	G	F	E	A	A	L	E	S	G	V	K	E	V	A	V	F
Template Known Secondary structure																	T	T		S								S		T	T	T		G	G	G	T	T								S				T	T	S						.	.	.			S										T	T
Template Predicted Secondary structure																																																										.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80				.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		104	.											.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.																																																											.	.	.						.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.																																																											.	.	.						.	.
Query Sequence		A	S	.	.	.	.	.	.	.	.	.	.	A	F	D	F	E	E	N	I	R	L	T	K	E	A	V	D	F	F	H	P	L	G	I	P	V	E	A	E	L	G	H	V	G	N	E	T	V	Y	E	E	A	L	A	G	Y	H	Y	T	D	P	D	Q	A	A	E	F	V	E	.	.	.	R	T	G	C	D	.	.
Query Conservation				.	.	.	.	.	.	.	.	.	.																																																											.	.	.						.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.												.	.	.						.	.
Template Conservation																																																						.	.	.	.	.	.	.
Template Sequence		A	A	A	S	E	A	F	S	Q	R	N	I	N	C	S	I	K	D	S	L	E	R	F	V	P	V	L	E	A	A	R	Q	H	Q	V	R	V	R	G	Y	I	S	C	V	L	G	C	P	Y	D	G	D	.	.	.	.	.	.	.	V	D	P	R	Q	V	A	W	V	A	R	E	L	Q	Q	M	G	C	Y	E	V
Template Known Secondary structure				S										S	S																			T	T										T	T		B	T	T	T	B		.	.	.	.	.	.	.																T	T		S
Template Predicted Secondary structure																																																						.	.	.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.								.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.																			.	.	.
Predicted Secondary structure																																	.											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	L	A	V	A	I	G	N	Q	H	G	V	Y	T	S	E	P	Q	L	N	F	E	V	V	K	R	V	R	D	A	V	.	S	V	P	L	V	L	H	G	A	S	.	.	G	I	S	D	A	D	I	K	T	A	I	S	L	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	I
Query Conservation																																	.											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.																	.											.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.
Template Sequence		S	L	G	D	T	I	G	V	G	.	.	.	.	.	.	T	A	G	A	T	R	R	L	I	E	A	V	A	S	E	V	P	R	E	R	L	A	G	H	F	H	D	T	Y	G	Q	A	L	A	N	I	Y	A	S	L	L	E	G	I	A	V	F	D	S	S	V	A	G	L	G	G	C	P	Y	A	K	G	A	T	G
Template Known Secondary structure						S	S	S			.	.	.	.	.	.													T	T	T	S		G	G	G						B		T	T	S												T	T							B	G	G	G			B		G	G	G	T	T		B
Template Predicted Secondary structure											.	.	.	.	.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.							.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	H	T	E	L	C	Q	A	A	M	V	A	V	K	E	N	Q	D	Q	P	F	L	H	L	E	R	E	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	A	S	E	D	V	L	Y	L	L	N	G	L	E	I	H	T	G	V	D	M	H	A	L	V	D	A	G	Q
Template Known Secondary structure		B		B											T	T		B
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions