Job Description P77704 Confidence 97.04% Date Thu Jan 5 12:31:54 GMT 2012 Rank 63 Aligned Residues 189 % Identity 17% Template c1ydoC_ PDB info PDB header:lyase Chain: C: PDB Molecule:hmg-coa lyase; PDBTitle: crystal structure of the bacillis subtilis hmg-coa lyase, northeast2 structural genomics target sr181. Resolution 2.71 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	N	A	E	M	L	M	G	V	I	D	A	A	E	E	A	K	S	P	V	I	I	S	F	G	T	G	F	V	G	N	T	S	F	E	D	F	S	H	M	M	V	S	M	A	Q	K	A	T	V	P	V	I	T	H	W	D	H	G	R	S	M	E	I	I	H	N	A	W	T	H	G	M	N	S	L	M	R	D	A
Query Conservation
Alig confidence																																																										.	.
Template Conservation																																																										.	.
Template Sequence		I	A	T	E	D	K	I	T	W	I	N	Q	L	S	R	T	G	L	S	Y	I	E	I	T	S	F	V	H	P	K	W	I	P	A	L	R	D	A	I	D	V	A	K	G	I	D	R	E	K	G	V	T	Y	A	A	L	.	.	V	P	N	Q	R	G	L	E	N	A	L	E	G	G	I	N	E	A	C	V	F	X
Template Known Secondary structure																T	T	T		S								S		T	T	T		G	G	G	T	T								S				T	T							.	.			S											T		S
Template Predicted Secondary structure																																																										.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80			.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		105	.	.	.	.											110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.			.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.																																																							.	.	.						.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.																																																							.	.	.						.	.
Query Sequence		S	A	F	D	F	.	.	.	.	.	.	.	.	.	.	E	E	N	I	R	L	T	K	E	A	V	D	F	F	H	P	L	G	I	P	V	E	A	E	L	G	H	V	G	N	E	T	V	Y	E	E	A	L	A	G	Y	H	Y	T	D	P	D	Q	A	A	E	F	V	E	.	.	.	R	T	G	C	D	.	.	S
Query Conservation							.	.	.	.	.	.	.	.	.	.																																																							.	.	.						.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.												.	.	.						.	.
Template Conservation																																																					.	.	.	.	.	.	.
Template Sequence		S	A	S	E	T	H	N	R	K	N	I	N	K	S	T	S	E	S	L	H	I	L	K	Q	V	N	N	D	A	Q	K	A	N	L	T	T	R	A	Y	L	S	T	V	F	G	C	P	Y	E	K	D	.	.	.	.	.	.	.	V	P	I	E	Q	V	I	R	L	S	E	A	L	F	E	F	G	I	S	E	L	S
Template Known Secondary structure			S	S						T	T	T		S																			T	T										T	T		B	T	T	T	B		.	.	.	.	.	.	.																	T		S
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.								.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.			210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.											.	.
Query SS confidence																																.											.	.
Query Sequence		L	A	V	A	I	G	N	Q	H	G	V	Y	T	S	E	P	Q	L	N	F	E	V	V	K	R	V	R	D	A	V	.	S	V	P	L	V	L	H	G	A	S	.	.	G	I	S	D	A	D	I	K	T	A	I	S	L	G	I	A	K	I	N
Query Conservation																																.											.	.
Alig confidence								.	.	.	.	.	.																			.											.	.
Template Conservation								.	.	.	.	.	.
Template Sequence		L	G	D	T	I	G	.	.	.	.	.	.	A	A	N	P	A	Q	V	E	T	V	L	E	A	L	L	A	R	F	P	A	N	Q	I	A	L	H	F	H	D	T	R	G	T	A	L	A	N	X	V	T	A	L	Q	X	G	I	T	V	F	D
Template Known Secondary structure					S	S		.	.	.	.	.	.																T	T	S		G	G	G						B	G	G	G	S													T
Template Predicted Secondary structure								.	.	.	.	.	.
Template SS confidence
		176	.	.	.	180	.							.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions