Job Description P76197 Confidence 39.88% Date Thu Jan 5 12:20:23 GMT 2012 Rank 8 Aligned Residues 387 % Identity 9% Template c3rkoN_ PDB info PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	N	P	Y	F	P	T	A	L	G	L	Y	F	N	Y	L	V	H	G	M	G	V	L	L	M	S	L	N	M	A	S	L	E	T	L	W	Q	T	N	A	A	G	V	S	I	V	I	S	S	L	G	I	G	R	L	S	V	L	L	F	A	G	L	L	S	D	R	F	G	R	R	P	F	I	M	L	G	M	C	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	N	H	F	L	N	A	T	L	S	V	I	G	L	N	A	A	L	V	S	L	W	F	V	G	Q	A	G	A	M	D	V	T	P	L	M	R	V	D	G	F	A	M	L	Y	T	G	L	V	L	L	A	S	L	A	T	C	T	F	A	Y	P	W	L	E	G	Y	N	D	N	K	D	E	F	Y	L	L	V	L	I
Template Known Secondary structure																												S						S	T	T	B			S																													S	S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	M	A	F	F	F	G	I	L	Q	T	N	N	I	I	I	A	Y	V	F	G	F	L	A	G	M	A	N	S	F	L	D	A	G	T	Y	P	S	L	M	E	A	F	P	R	S	P	G	T	A	N	I	L	I	K	A	F	V	S	S	G	Q	F	L	L	P	L	I	I	S	L	L	V	W	A	E	L	W	F	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	L	G	G	I	L	L	A	N	A	N	H	L	A	S	L	F	L	G	I	E	L	I	S	L	P	L	F	G	L	V	G	Y	A	F	R	Q	K	R	S	L	E	A	S	I	K	Y	T	I	L	S	A	A	A	S	S	F	L	L	F	G	M	A	L	V	Y	A	Q	S	G	D	L	S	F	V	A	L	G	K
Template Known Secondary structure											T	B		S	S										T	T									T	T	T	T	S																																S	S			S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	S	F	M	I	A	A	G	I	M	F	I	N	A	L	F	L	Y	R	C	T	F	P	P	H	P	G	R	R	L	P	V	I	K	K	T	T	S	S	T	E	H	R	C	S	I	I	D	L	A	S	Y	T	L	Y	G	Y	I	S	M	A	T	F	Y	L	V	S	Q	W	L	A	Q	Y	G	Q	F	V	A	G	M
Query Conservation
Alig confidence																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	E	P	L	L	L	A	G	F	G	L	M	I	V	G	L	G	F	K	L	S	L	V	P	F	H	L	W	T	P	D	V	Y	Q	G	A	P	A	P	V	S	T	F	L	A	T	A	S	K	I	A	I	F	G	V	V	M	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	F	L	Y	A	P	V	G
Template Known Secondary structure																						T		T	T	S		T									S										T													.	.	.	.	.	.	.	.	.	.	.	.	.	.						G	G	G
Template Predicted Secondary structure																																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.															.	.	.	260	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Y	T	M	S	I	K	L	L	S	I	Y	T	V	G	S	L	L	C	V	F	I	T	A	P	L	I	R	N	T	V	R	P	T	T	L	L	M	L	Y	T	F	I	S	F	I	A	L	F	T	V	C	L	H	P	T	F	Y	V	V	I	I	F	A	F	V	I	G	F	T	S	A	G	G	V	V	Q	I	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	S	E	A	I	R	V	V	L	A	I	I	A	F	A	S	I	I	F	G	N	L	M	A	L	S	Q	T	N	I	K	R	L	L	G	Y	S	S	I	S	H	L	G	Y	L	L	V	A	L	I	A	L	Q	T	G	E	M	S	M	E	A	V	G	V	Y	L	A	G	Y	L	F	S	S	L	G	A	F	G	V	V
Template Known Secondary structure		G		S																							T			B																						T	S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
		322	.	.	.	.	.	.	.	330														.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.						.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.
Query Sequence		T	L	M	A	E	R	F	P	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	G	K	A	T	G	I	Y	Y	S	A	G	S	I	A	T	F	T	I	P	L	I	T	A	H	L	S	Q	R	S	I	A	D	I	M	.	.	.	.	.	W	F	D	T	A	I	A	A	I	G	F	L	L	A	L	F	I
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.
Template Conservation
Template Sequence		S	L	M	S	S	P	Y	R	G	P	D	A	D	S	L	F	S	Y	R	G	L	F	W	H	R	P	I	L	A	A	V	M	T	V	M	M	L	S	L	A	G	I	P	M	T	L	G	F	I	G	K	F	Y	V	L	A	V	G	V	Q	A	H	L	W	W	L	V	G	A	V	V	V	G	S	A	I	G	L	Y	Y
Template Known Secondary structure							S			S	S				B	G	G	G		S	S		T	T	T	S														T	T	T		T	T	S																T	T
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	R	S	R	K	K	T	R	H	H	S	L	K	E	N	V	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L	R	V	A	V	S	L	Y	L	H	A	P	E	Q	P	S	N	W
Template Known Secondary structure											S								S	T
Template Predicted Secondary structure
Template SS confidence
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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