Job Description P38097 Confidence 99.82% Date Thu Jan 5 11:57:56 GMT 2012 Rank 25 Aligned Residues 233 % Identity 13% Template c3gecA_ PDB info PDB header:circadian clock protein Chain: A: PDB Molecule:period circadian protein; PDBTitle: crystal structure of a tandem pas domain fragment of2 drosophila period Resolution 4.00 Å

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		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	G	M	A	L	V	G	T	E	G	Q	W	L	Q	T	N	K	A	L	C	Q	F	L	G	Y	S	Q	E	E	L	R	G	L	T	F	Q	Q	L	T	W	P	E	D	L	N	K	D	L	Q	Q	V	E	K	L	I	S	G	E	I	N	T	Y	S	M	E	K	R	Y	Y	N	R	N	G	D	V	V	W	A	L
Query Conservation
Alig confidence																																																						.	.	.	.	.	.
Template Conservation																																																						.	.	.	.	.	.
Template Sequence		S	F	C	C	V	I	S	M	H	D	G	I	V	L	Y	T	T	P	S	I	T	D	V	L	G	Y	P	R	D	M	W	L	G	R	S	F	I	D	F	V	H	L	K	D	R	A	T	F	A	S	Q	I	.	.	.	.	.	.	T	T	G	I	S	T	F	C	V	M	L	R	R	Y	R	G	S	Y	E	P	F	R
Template Known Secondary structure									S	S					S				T	T					T	S	S						S	S	S		G	G	G	S	B		T	T	T								T	.	.	.	.	.	.	T	T	T
Template Predicted Secondary structure																																																						.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290							.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	V	S	L	V	R	H	T	D	G	T	P	L	Y	F	I	A	Q	I	E	D	I	N	E	L	K	R	T	E	Q	V	N	Q	Q	L	M	E	R	I	T	L	A	N	E	A	G	G	I	G	I	W	E	W	E	L	K	P	N	I	F	S	W	D	K	R	M	F	E	L	Y	E	I	P	P	H	I	K	P	N
Query Conservation
Alig confidence		.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	L	G	L	T	F	R	E	M	L	L	V	I	C	A	T	P	I	K	S	S	Y	K	V	P	D	E	I	L	S	Q	K	S	P	K	F	.	.	.	.	.	.	.	.	.	.	A	I	R	H	T	A	T	G	I	I	S	H	V	D	S	A	A	V	S	A	L	G	Y	L	P	Q	D	L	I	G
Template Known Secondary structure		.	.	.	.	.																				S			S	S	S					S	S	S		B		.	.	.	.	.	.	.	.	.	.						T	T	S	B						S	T	T	T	T	T	S				G	G	G	S	S	S
Template Predicted Secondary structure		.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
							340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.											.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500						.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.			.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.																											.	.
Query SS confidence																															.	.	.	.	.																											.	.
Query Sequence		W	Q	V	W	Y	E	C	V	L	P	E	D	R	Q	H	A	E	K	V	I	R	D	S	L	Q	S	R	S	P	.	.	.	.	.	F	K	L	E	F	R	I	T	V	K	D	G	I	R	H	I	R	A	L	A	N	R	V	L	N	K	.	.	E	G	E	V	E	R	L	L	G	I	N	M	D	M	T	E	V	K
Query Conservation																															.	.	.	.	.																											.	.
Alig confidence		.																													.	.	.	.	.																											.	.
Template Conservation		.
Template Sequence		.	R	S	I	M	D	F	Y	H	H	E	D	L	S	V	M	K	E	T	Y	E	T	V	M	K	K	G	Q	T	A	G	A	S	F	C	S	K	P	Y	R	F	L	I	Q	N	G	C	Y	V	L	L	E	T	E	W	T	S	F	V	N	P	W	S	R	K	L	E	F	V	V	G	H	H	R	V	F	Q	G	P	K
Template Known Secondary structure		.	S	B					S																		G	G	G	S	S	S				B									S	S	S															T	T	T	T										B						S
Template Predicted Secondary structure		.
Template SS confidence
			422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
		545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	N	E	A	L	F	Q	E	K	E	R	L	H	I	T	L	D	S	I	G	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	C	N	V	F	E	A	A	P	T	C	K	L	K	I	S	E	E	A	Q	S	R
Template Known Secondary structure		S			S	S	S										T	T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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