Job Description P38097 Confidence 99.75% Date Thu Jan 5 11:57:56 GMT 2012 Rank 27 Aligned Residues 218 % Identity 11% Template c3gdiB_ PDB info PDB header:transcription Chain: B: PDB Molecule:period circadian protein homolog 2; PDBTitle: mammalian clock protein mper2 - crystal struture of a pas2 domain fragment Resolution 2.40 Å

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		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	G	M	A	L	V	G	T	E	G	Q	W	L	Q	T	N	K	A	L	C	Q	F	L	G	Y	S	Q	E	E	L	R	G	L	T	F	Q	Q	L	T	W	P	E	D	L	N	K	D	L	Q	Q	V	E	K	L	I	S	G	E	I	N	T	Y	S	M	E	K	R	Y	Y	N	R	N	G	D	V	V	W	A	L
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.																																		.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.																																		.	.	.
Template Sequence		M	F	A	V	A	V	S	L	V	S	G	K	I	L	Y	I	S	N	Q	V	.	.	.	.	.	.	.	.	.	A	S	I	D	A	K	F	V	E	F	L	A	P	H	D	V	S	V	F	H	S	Y	T	T	P	Y	K	L	P	M	E	E	K	.	.	.	S	F	F	C	R	V	S	V	G	R	Y	Q	P	F	R
Template Known Secondary structure									S	S	S										S	.	.	.	.	.	.	.	.	.	S						G	G	G	T	B		G	G	G								T	S	T	T	T							.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.																																		.	.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.										210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	V	S	L	V	R	H	T	D	G	T	P	L	Y	F	I	A	Q	I	E	D	I	N	E	L	K	R	T	E	Q	V	N	Q	Q	L	M	E	R	I	T	L	A	N	E	A	G	G	I	G	I	W	E	W	E	L	K	P	N	I	F	S	W	D	K	R	M	F	E	L	Y	E	I	P	P	H	I	K	P	N
Query Conservation
Alig confidence													.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	T	P	Y	L	V	K	E	S	Q	L	.	.	C	C	L	L	L	A	E	R	V	H	S	G	Y	E	A	P	R	I	P	P	E	K	R	I	.	.	.	.	.	.	.	.	.	.	.	.	F	T	T	T	H	T	P	N	C	L	F	Q	A	V	D	E	R	A	V	P	L	L	G	Y	L	P	Q	D	L	I	E
Template Known Secondary structure													.	.								B				T	T	S	T	T				G	G	G			.	.	.	.	.	.	.	.	.	.	.	.							T	T	S	B						T	T						S							T	T
Template Predicted Secondary structure													.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.			300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.													.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		472	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500			.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.			.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.																										.	.
Query SS confidence																															.	.																										.	.
Query Sequence		W	Q	V	W	Y	E	C	V	L	P	E	D	R	Q	H	A	E	K	V	I	R	D	S	L	Q	S	R	S	P	.	.	F	K	L	E	F	R	I	T	V	K	D	G	I	R	H	I	R	A	L	A	N	R	V	L	N	.	.	K	E	G	E	V	E	R	L	L	G	I	N	M	D	M	T	E	V	K	Q	L	N
Query Conservation																															.	.																										.	.
Alig confidence				.																											.	.																										.	.
Template Conservation				.
Template Sequence		T	P	.	V	L	V	Q	L	H	P	S	D	R	P	L	M	L	A	I	H	K	K	I	L	Q	A	G	G	Q	P	F	D	Y	S	P	I	R	F	R	T	R	N	G	E	Y	I	T	L	D	T	S	W	S	S	F	I	N	P	W	S	R	K	I	S	F	I	I	G	R	H	K	V	R	V	G	P	L	N	E	D
Template Known Secondary structure		S	B	.	T	G	G	G	B		T	T	T	T	T													T	T													T	T	S															T	T	T																	S	S	S
Template Predicted Secondary structure				.
Template SS confidence
		362	.		.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
		548	.	550	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	L	F	Q	E	K	E	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	F	A	A	P	P	C	P	E
Template Known Secondary structure		T	T	S			S	S
Template Predicted Secondary structure
Template SS confidence
		441	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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