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Job DescriptionP38097
Confidence99.75%DateThu Jan 5 11:57:56 GMT 2012
Rank26Aligned Residues245
% Identity11%Templatec1wa9A_
PDB info PDB header:circadian rhythmChain: A: PDB Molecule:period circadian protein; PDBTitle: crystal structure of the pas repeat region of the2 drosophila clock protein period
Resolution3.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   312.......320.........330.........340.........350.........360.........370.........380.........390.
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Query Sequence  AIGMALVGTEGQWLQTNKALCQFLGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRNGDVVWAL
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Template Sequence  SFCCVISMHDGIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQITTGIAKS. TFCVMLRRYRGLKSGGFGVI
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TTT
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TTSSTTSBGGGGB
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   239240.........250.........260.........270.........280.........290....... ..300.........310.......
 
   392.......400.........410......... 420.........430.........440.........450.........460
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Query Sequence  LAVSLVRHTDGTPLYFIAQIEDINELKR. . . . . . . . . . . TEQVNQQLMERITLANEAGGIGIWEWELKPNIFSWDKRMFE
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Template Sequence  GR. . . . . PVSYEPFRLGLTFREAPEEARSNGTNMLLVICATPIKSSYKVPDEILSQKSPKFAIRHTATGIISHVDSAAVS
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   330. ........340.........350.........360.........370.........380.........390.........400....
 
   461........470.........480.........490.........500 .........510... ......520.........530....
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Query Sequence  LYEIPPHIKPNWQVWYECVLPEDRQHAEKVIRDSLQSRSP. . . . . FKLEFRITVKDGI. RHIRALANRVLNKEGEVERLL
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Template Sequence  ALGYLPQDLIGRSIM. DFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQNGCYVLLETEWTSFVNPWSRKLEFV
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TTSBGG.GGB
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   411........420..... ....430.........440.........450.........460.........470.........480.........
 
   535....540.........550.........560...
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Query Sequence  GINMDMTEVKQLNEALFQEKERLHITLDS
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Template Sequence  VGHHRVFQGPKQCNVFEAAPTCKLKISEE
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GGG
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   490.........500.........510........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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