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Job DescriptionP38097
Confidence78.42%DateThu Jan 5 11:57:56 GMT 2012
Rank190Aligned Residues115
% Identity14%Templatec1ny5A_
PDB info PDB header:transcriptionChain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   977..980.........990.........1000.........1010.........1020.........1030.........1040.........1050......
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Query Sequence  LHLIIPAEAILDHAESVQKLRLAGCRIVLSQVGRDLQIFNSLKANMADYLLLDGELCANVQGNLMDEMLITIIQGHAQRL
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Template Sequence  MNVLVIEDDKVFRGLLEEYLSMKGIKVES. . AERGKEAYKLLSEKHFNVVLLDLL. . . . . LPDVNGLEILKWIKE. . RSP
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   1........10.........20......... 30.........40.........50... ......60........ .70.
 
   1057..1060.. .......1070.........1080.........1090.........1100....
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Query Sequence  GMKTIA. GPVVLPLVMDTLSGIGVDLIYGEVIADAQPLDLLVNSSYFAI
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Template Sequence  ETEVIVITGHGTIKTAVEAMKMGAY. . . . DFLTKPCMLEEIELTINKAI
Template Known Secondary structure  TSTT
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   72.......80.........90...... ...100.........110......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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