Phyre 2 alignment of P52612 with c3l0oB

Job Description P52612
Confidence 100.00% Date Thu Jan 5 12:05:51 GMT 2012

Rank 23 Aligned Residues 337

% Identity 23% Template c3l0oB_

PDB info PDB header:hydrolase Chain: B: PDB Molecule:transcription termination factor rho; PDBTitle: structure of rna-free rho transcription termination factor from2 thermotoga maritima

Resolution 2.35 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	V	G	F	N	G	Q	R	L	F	L	M	P	L	E	E	V	E	G	V	L	P	G	A	R	V	Y	A	K	N	I	S	A	E	G	L	Q	S	G	K	Q	L	P	L	G	P	A	L	L	G	R	V	L	D	G	S	G	K	P	L	D	G	L	P	S	P	D	T	T	E	T	G	A	L	I	T	P	P	F	N
Query Conservation
Alig confidence																																		.	.	.	.																																											.
Template Conservation																																		.	.	.	.																																											.
Template Sequence	V	L	E	I	H	P	E	G	F	G	F	L	R	R	I	E	D	N	L	L	P	S	N	D	D	I	Y	I	S	P	S	Q	I	.	.	.	.	R	K	F	N	L	N	T	G	D	I	I	S	G	V	I	A	M	I	K	I	E	A	I	N	Y	R	P	R	V	N	F	D	N	L	T	P	D	Y	P	R	E	R	.
Template Known Secondary structure						S	S	S							G	G	G	T	T				T	T						S	S	S	S	.	.	.	.	S	S	S				T	T										S			S			S	S						T	T	T	S							S	B	.
Template Predicted Secondary structure																																		.	.	.	.																																											.
Template SS confidence
	61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.

	149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.					.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.
Query SS confidence																																																							.	.	.	.
Query Sequence	P	L	Q	R	T	P	I	E	H	V	L	D	T	G	V	R	P	I	N	A	L	L	T	V	G	R	G	Q	R	M	G	L	F	A	G	S	G	V	G	K	S	V	L	L	G	M	M	A	R	Y	T	R	A	D	.	.	.	.	V	I	V	V	G	L	I	G	E	R	G	R	E	V	K	D	F	I	E	N	I	L
Query Conservation																																																							.	.	.	.
Alig confidence	.	.	.																																																				.	.	.	.																						.
Template Conservation	.	.	.																																																																													.
Template Sequence	.	.	.	F	I	L	E	T	D	P	K	I	Y	S	T	R	L	I	D	L	F	A	P	I	G	K	G	Q	R	G	M	I	V	A	P	P	K	A	G	K	T	T	I	L	K	E	I	A	N	G	I	A	E	N	H	P	D	T	I	R	I	I	L	L	I	D	E	R	P	E	E	V	T	D	I	R	E	S	T	.
Template Known Secondary structure	.	.	.						S	T	T											S			B	T	T									T	T	S	S																	T	T	S																			T	T	S	.
Template Predicted Secondary structure	.	.	.																																																																													.
Template SS confidence
				152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.

	225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	A	E	G	R	A	R	S	V	V	I	A	A	P	A	D	V	S	P	L	L	R	M	Q	G	A	A	Y	A	T	R	I	A	E	D	F	R	D	R	G	Q	H	V	L	L	I	M	D	S	L	T	R	Y	A	M	A	Q	R	E	I	A	L	A	I	G	E	P	P	A	T	K	G	Y	P	P	S	V	F	A	K
Query Conservation
Alig confidence	.	.	.	.	.	.																																																																.
Template Conservation	.	.	.	.	.	.																																																																.
Template Sequence	.	.	.	.	.	.	N	A	I	V	I	A	A	P	F	D	M	P	P	D	K	Q	V	K	V	A	E	L	T	L	E	M	A	K	R	L	V	E	F	N	Y	D	V	V	I	L	L	D	S	L	T	R	L	A	R	V	Y	N	I	V	V	P	P	S	G	K	L	L	T	.	G	G	V	D	P	A	A	L	Y	K
Template Known Secondary structure	.	.	.	.	.	.		S							T	T	S																						T	T																					S		S		S	S			S	.	S	S			T	T	T	T	S	T
Template Predicted Secondary structure	.	.	.	.	.	.																																																																.
Template SS confidence
							228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290		.	.	.	.	.	.	.	.	.	300

	305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.		.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence	L	P	A	L	V	E	R	A	G	N	G	I	S	G	G	G	S	I	T	A	F	Y	T	V	L	T	E	.	G	D	D	Q	Q	D	P	I	A	D	S	A	R	A	I	L	D	G	H	I	V	L	S	R	R	L	A	E	A	G	H	Y	P	A	I	D	I	E	A	S	I	S	R	A	M	T	A	L	I	S	E	Q
Query Conservation																												.
Alig confidence											.																	.
Template Conservation											.
Template Sequence	P	K	R	F	F	G	A	A	R	N	.	T	R	E	G	G	S	L	T	I	I	A	T	A	L	V	E	T	G	S	K	M	D	E	V	I	F	E	E	F	K	G	T	G	N	M	E	L	V	L	S	R	Q	L	A	N	K	R	I	F	P	A	I	N	L	L	L	S	G	T	R	R	E	E	L	L	L	D	E	E
Template Known Secondary structure						T	T		B		.		S	S	S												S	S	S		T	T	T	B	T	T					T	T			S					B						T	T	T		S	S		B		G	G	G				T	T	G	G	G	T	S
Template Predicted Secondary structure											.
Template SS confidence
	301	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.

	384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410			.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence	H	Y	A	R	V	R	T	F	K	Q	L	L	S	S	F	Q	R	N	R	D	L	V	S	V	G	A	Y	.	.	A	K	G	S	D	P	M	L	D	K	A	I
Query Conservation																												.	.
Alig confidence																												.	.
Template Conservation
Template Sequence	T	L	K	K	V	W	L	L	R	R	M	L	S	A	M	T	E	E	E	G	L	T	L	I	L	N	K	L	S	E	T	S	S	N	E	E	F	L	K	L	I
Template Known Secondary structure											T	T	T	T	S		T	T												T		S	S							T
Template Predicted Secondary structure
Template SS confidence
	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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