Job Description P52612 Confidence 100.00% Date Thu Jan 5 12:05:51 GMT 2012 Rank 4 Aligned Residues 419 % Identity 28% Template c3a5dM_ PDB info PDB header:hydrolase Chain: M: PDB Molecule:v-type atp synthase beta chain; PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase Resolution 4.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																				.																																																.
Query SS confidence																				.																																																.
Query Sequence		R	Y	G	R	L	T	R	A	T	G	L	V	L	E	A	T	G	L	.	Q	L	P	L	G	A	T	C	V	I	E	R	Q	N	G	S	E	T	H	E	V	E	S	E	V	V	G	F	N	G	Q	R	L	F	L	M	P	L	E	E	V	E	G	V	L	P	G	.	A	R	V	Y	A	K	N	I	S	A	E	G	L
Query Conservation																				.																																																.
Alig confidence																				.																.	.	.																														.								.	.	.	.	.	.
Template Conservation																																				.	.	.																																						.	.	.	.	.	.
Template Sequence		E	Y	T	G	I	T	Y	I	S	G	P	L	L	F	V	E	N	A	K	D	L	A	Y	G	A	I	V	D	I	K	D	G	T	G	.	.	.	R	V	R	G	G	Q	V	I	E	V	S	E	E	Y	A	V	I	Q	V	F	E	E	T	T	G	L	D	L	A	T	T	S	V	S	L	V	E	.	.	.	.	.	.
Template Known Secondary structure											T	T							S	S					T	T						S	S		S	.	.	.	S												T	T							S	S			T	T			T	T							S	.	.	.	.	.	.
Template Predicted Secondary structure																																				.	.	.																																						.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40				.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	S	G	K	Q	L	P	L	G	P	A	L	L	G	R	V	L	D	G	S	G	K	P	L	D	G	L	P	S	P	D	T	T	E	T	G	A	L	I	T	P	P	F	N	P	L	Q	R	T	P	I	E	H	V	L	D	T	G	V	R	P	I	N	A	L	L	T	V	G	R	G	Q	R	M	G	L	F	A	G	S
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	D	V	A	R	L	G	V	S	K	E	M	L	G	R	R	F	N	G	I	G	K	P	I	D	G	L	P	P	I	T	P	E	K	R	L	P	I	T	G	L	P	L	N	P	V	A	R	R	K	P	E	Q	F	I	Q	T	G	I	S	T	I	D	V	M	N	T	L	V	R	G	Q	K	L	P	I	F	S	G	S
Template Known Secondary structure		.	S								G	G	G	T	T					T	T	S		B	S	S	S							S					S	S	S		S	S			B		S					S	B		B		S						T	T	S			B	T	T		B							T
Template Predicted Secondary structure		.
Template SS confidence
			78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.							200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.
Query Sequence		G	V	G	K	S	V	L	L	G	M	M	A	R	Y	T	.	.	.	.	.	.	R	A	D	V	I	V	V	G	L	I	G	E	R	G	R	E	V	K	D	F	I	E	N	I	L	G	A	E	G	R	A	R	S	V	V	I	A	A	P	A	D	V	S	P	L	L	R	M	Q	G	A	A	Y	A	T	R	I	A	E
Query Conservation																	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	P	A	N	E	I	A	A	Q	I	A	R	Q	A	T	V	R	P	K	E	E	P	F	A	V	V	F	A	A	M	G	I	T	Q	R	E	L	S	Y	F	I	Q	E	F	E	R	T	G	A	L	S	R	S	V	L	F	L	N	K	A	D	D	P	T	I	E	R	I	L	T	P	R	M	A	L	T	V	A	E
Template Known Secondary structure		T	S														B						S																											S	G	G	G	G								T	T	S
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		259	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
Predicted Secondary structure					.
Query SS confidence					.
Query Sequence		D	F	R	.	D	R	G	Q	H	V	L	L	I	M	D	S	L	T	R	Y	A	M	A	Q	R	E	I	A	L	A	I	G	E	P	P	A	T	K	G	Y	P	P	S	V	F	A	K	L	P	A	L	V	E	R	A	G	N	G	I	S	G	G	G	S	I	T	A	F	Y	T	V	L	T	E	G	D	D	Q	Q	D
Query Conservation					.
Alig confidence					.
Template Conservation
Template Sequence		Y	L	A	F	E	H	D	Y	H	V	L	V	I	L	T	D	M	T	N	Y	C	E	A	L	R	E	I	G	A	A	R	E	E	I	P	G	R	R	G	Y	P	G	Y	M	Y	T	D	L	A	T	I	Y	E	R	A	G	V	V	E	G	K	K	G	S	V	T	Q	I	P	I	L	S	M	P	D	D	D	R	T	H
Template Known Secondary structure							S										T															T	T					G	G	G			T	T										T	S				B	T	T	S	S												G	G	G		T	T	S
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.						.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
Predicted Secondary structure																																														.	.	.	.	.
Query SS confidence																																														.	.	.	.	.
Query Sequence		P	I	A	D	S	A	R	A	I	L	D	G	H	I	V	L	S	R	R	L	A	E	A	G	H	Y	P	A	I	D	I	E	A	S	I	S	R	A	M	T	A	L	I	S	.	.	.	.	.	E	Q	H	Y	A	R	V	R	T	F	K	Q	L	L	S	S	F	Q	R	N	R	D	L	V	S	V	G	A	Y	A	K
Query Conservation																																														.	.	.	.	.
Alig confidence																																														.	.	.	.	.
Template Conservation
Template Sequence		P	I	P	D	L	T	G	Y	I	T	E	G	Q	I	Q	L	S	R	E	L	H	R	K	G	I	Y	P	P	I	D	P	L	P	S	L	S	R	L	M	N	N	G	V	G	K	G	K	T	R	E	D	H	K	Q	V	S	D	Q	L	Y	S	A	Y	A	N	G	V	D	I	R	K	L	V	A	I	I	G	E	D	A
Template Known Secondary structure								G	G	G		S					B							T	T		S	S		B		T	T	T				S	S	G	G	G	G		S	T	T	T	S		T	T																											G	G	G
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		413	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	D	P	M	L	D	K	A	I	A	L	W	P	Q	L	E	G	Y	L	Q	Q	G	I	F	E	R	A	D	W	E	A	S	L	Q	G	L	E	R	I	F	P	T	V
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		L	T	E	N	D	.	R	R	Y	L	Q	F	A	D	A	F	E	R	F	F	I	N	Q	G	Q	Q	N	R	S	I	E	E	S	L	Q	I	A	W	A	L	L	S	M	L
Template Known Secondary structure		S					.														T	T			S	S																	T	T	S
Template Predicted Secondary structure							.
Template SS confidence
		404	.	.	.	.		.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.