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Job DescriptionP52612
Confidence100.00%DateThu Jan 5 12:05:51 GMT 2012
Rank4Aligned Residues419
% Identity28%Templatec3a5dM_
PDB info PDB header:hydrolaseChain: M: PDB Molecule:v-type atp synthase beta chain; PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase
Resolution4.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.... .....50.........60.........70.........80.........90. ........100....
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Query Sequence  RYGRLTRATGLVLEATGL. QLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVEGVLPG. ARVYAKNISAEGL
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Template Sequence  EYTGITYISGPLLFVENAKDLAYGAIVDIKDGTG. . . RVRGGQVIEVSEEYAVIQVFEETTGLDLATTSVSLVE. . . . . .
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TTSS



TT
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S...S

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   7..10.........20.........30.........40 .........50.........60.........70.......
 
   105....110.........120.........130.........140.........150.........160.........170.........180....
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Query Sequence  QSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPPFNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGS
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Template Sequence  . DVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFSGS
Template Known Secondary structure  .S



GGGTTTTS
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S
SSS
SS

B
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SB
B
S
TTS

BTT
B

T
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   78.80.........90.........100.........110.........120.........130.........140.........150......
 
   185....190......... 200.........210.........220.........230.........240.........250........
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Query Sequence  GVGKSVLLGMMARYT. . . . . . RADVIVVGLIGERGREVKDFIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAE
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Template Sequence  GLPANEIAAQIARQATVRPKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDPTIERILTPRMALTVAE
Template Known Secondary structure  TS

B




S

SGGGGTTS
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   157..160.........170.........180.........190.........200.........210.........220.........230......
 
   259260. ........270.........280.........290.........300.........310.........320.........330.......
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Query Sequence  DFR. DRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTEGDDQQD
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Template Sequence  YLAFEHDYHVLVILTDMTNYCEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVEGKKGSVTQIPILSMPDDDRTH
Template Known Secondary structure  S

TTT



GGG

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   244.....250.........260.........270.........280.........290.........300.........310.........320...
 
   338.340.........350.........360.........370.........380. ........390.........400.........410..
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Query Sequence  PIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALIS. . . . . EQHYARVRTFKQLLSSFQRNRDLVSVGAYAK
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Template Sequence  PIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGKTREDHKQVSDQLYSAYANGVDIRKLVAIIGEDA
Template Known Secondary structure  GGG
SB
TT
SS
B
TTT
SSGGGG
STTTS
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   324.....330.........340.........350.........360.........370.........380.........390.........400...
 
   413......420.........430.........440.........450......
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Query Sequence  GSDPMLDKAIALWPQLEGYLQQGIFERADWEASLQGLERIFPTV
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Template Sequence  LTEND. RRYLQFADAFERFFINQGQQNRSIEESLQIAWALLSML
Template Known Secondary structure  S
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   404.... .410.........420.........430.........440......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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