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Job DescriptionP52612
Confidence100.00%DateThu Jan 5 12:05:51 GMT 2012
Rank13Aligned Residues413
% Identity28%Templatec3a5dB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:v-type atp synthase alpha chain; PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase
Resolution4.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.... .....50.........60.........70.........80.........90.........100.....
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Query Sequence  RYGRLTRATGLVLEATGL. QLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVEGVLPGARVYAKNISAEGLQ
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Template Sequence  IQGVIQKIAGPAVIAKGMLGARMYDICKVGEEG. . . . . . LVGEIIRLDGDTAFVQVYEDTSGLKVGEPVVSTG. . . . . . .
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STT
TT

TT
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SS
SS
GGG

TT

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   2.......10.........20.........30.... .....40.........50.........60........
 
   106...110.........120.........
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Query Sequence  SGKQLPLGPALLGRVLDGSGKPLD. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LPLAVELGPGMLNGIYDGIQRPLVHALDREKKWAWTPMVKPGDEVRGGMVLGTVPEFGFTHKILVPPDVRGRVKEVKPAG
Template Known Secondary structure  SSS
STT
TT
TTS




SS
SS




TT

TT

SSSS


TT



S
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   6970.........80.........90.........100.........110.........120.........130.........140........
 
   130.........140.........150.........160.........170.........180.........190.......
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Query Sequence  . . . . . . . . . . . . GLPSPDTTETGALITPPFNPLQRTPIEHVLDTGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMAR
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Template Sequence  EYTVEEPVVVLEDGTELKMYHTWPVRRARP. VQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKTVTQQSLAK
Template Known Secondary structure 
TTS

TT


S

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S
SB


S
S

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   165....170.........180.........190.... .....200.........210.........220.........230.........240...
 
   198.200.........210.........220..... ....230.........240.........250.........260.........270
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Query Sequence  YTRADVIVVGLIGERGREVKDFIENILG. . . . . . . AEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLI
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Template Sequence  WSNADVVVYVGCGERGNEMTDVLVEFPELTDPKTGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYFRDQGFSVALM
Template Known Secondary structure  SS
S

S

TTTTTTGGG
TTTTGGGG

TTS
TT
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   244.....250.........260.........270.........280.........290.........300.........310.........320...
 
   271........280.........290.........300.........310...... ...320.........330.........340.......
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Query Sequence  MDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGI. . . SGGGSITAFYTVLTEGDDQQDPIADSARAIL
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Template Sequence  ADSTSRWAEALREISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLGGEEGAVTIVGAVSPPGGDMSEPVTQSTLRIV
Template Known Secondary structure  S
TT



GGG

TTT

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TT
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   324.....330.........340.........350.........360.........370.........380.........390.........400...
 
   348.350.........360.........370......... 380.........390.........400.........410.........420
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Query Sequence  DGHIVLSRRLAEAGHYPAIDIEASISRAMTAL. . . . . . . ISEQHYARVRTFKQLLSSFQRNRDLVSVGAYAKGSDPMLDK
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Template Sequence  GAFWRLDASLAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQLVGPDA. LQDAERL
Template Known Secondary structure  S

B
TT
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B
TTT
TTT
TT
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   404.....410.........420.........430.........440.........450.........460.........470..... ....480..
 
   421........430 ........ .440.........450....
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Query Sequence  AIALWPQLEG. YLQQGIFE. . . . RADWEASLQGLERIFP
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Template Sequence  VIEVGRIIREDFLQQNAYHEVDAYCSMKKAYGIMKMILA
Template Known Secondary structure  TT


TTSTTTTS

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   483......490.........500.........510.........520.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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