Job Description P52612 Confidence 100.00% Date Thu Jan 5 12:05:51 GMT 2012 Rank 13 Aligned Residues 413 % Identity 28% Template c3a5dB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:v-type atp synthase alpha chain; PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase Resolution 4.80 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		R	Y	G	R	L	T	R	A	T	G	L	V	L	E	A	T	G	L	.	Q	L	P	L	G	A	T	C	V	I	E	R	Q	N	G	S	E	T	H	E	V	E	S	E	V	V	G	F	N	G	Q	R	L	F	L	M	P	L	E	E	V	E	G	V	L	P	G	A	R	V	Y	A	K	N	I	S	A	E	G	L	Q
Query Conservation																				.
Alig confidence																				.															.	.	.	.	.	.																																			.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.																																			.	.	.	.	.	.	.
Template Sequence		I	Q	G	V	I	Q	K	I	A	G	P	A	V	I	A	K	G	M	L	G	A	R	M	Y	D	I	C	K	V	G	E	E	G	.	.	.	.	.	.	L	V	G	E	I	I	R	L	D	G	D	T	A	F	V	Q	V	Y	E	D	T	S	G	L	K	V	G	E	P	V	V	S	T	G	.	.	.	.	.	.	.
Template Known Secondary structure			S									T	T								T	T			T	T						T	T	S	.	.	.	.	.	.										S	S							S	S		G	G	G			T	T							S	.	.	.	.	.	.	.
Template Predicted Secondary structure																																			.	.	.	.	.	.																																			.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.							.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	K	Q	L	P	L	G	P	A	L	L	G	R	V	L	D	G	S	G	K	P	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	L	A	V	E	L	G	P	G	M	L	N	G	I	Y	D	G	I	Q	R	P	L	V	H	A	L	D	R	E	K	K	W	A	W	T	P	M	V	K	P	G	D	E	V	R	G	G	M	V	L	G	T	V	P	E	F	G	F	T	H	K	I	L	V	P	P	D	V	R	G	R	V	K	E	V	K	P	A	G
Template Known Secondary structure		S	S	S					S	T	T		T	T					T	T	S						S	S		S	S											T	T					T	T								S	S	S	S								T	T											S
Template Predicted Secondary structure
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
														130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	G	L	P	S	P	D	T	T	E	T	G	A	L	I	T	P	P	F	N	P	L	Q	R	T	P	I	E	H	V	L	D	T	G	V	R	P	I	N	A	L	L	T	V	G	R	G	Q	R	M	G	L	F	A	G	S	G	V	G	K	S	V	L	L	G	M	M	A	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																																.
Template Sequence		E	Y	T	V	E	E	P	V	V	V	L	E	D	G	T	E	L	K	M	Y	H	T	W	P	V	R	R	A	R	P	.	V	Q	R	K	L	D	P	N	T	P	F	L	T	G	M	R	I	L	D	V	L	F	P	V	A	M	G	G	T	A	A	I	P	G	P	F	G	S	G	K	T	V	T	Q	Q	S	L	A	K
Template Known Secondary structure					T	T	S						T	T						S						T	T	S				.		S					S		S	B				S								S			B	T	T								S	T	T	S	S
Template Predicted Secondary structure																																.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.								.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																														.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.
Query Sequence		Y	T	R	A	D	V	I	V	V	G	L	I	G	E	R	G	R	E	V	K	D	F	I	E	N	I	L	G	.	.	.	.	.	.	.	A	E	G	R	A	R	S	V	V	I	A	A	P	A	D	V	S	P	L	L	R	M	Q	G	A	A	Y	A	T	R	I	A	E	D	F	R	D	R	G	Q	H	V	L	L	I
Query Conservation																														.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	S	N	A	D	V	V	V	Y	V	G	C	G	E	R	G	N	E	M	T	D	V	L	V	E	F	P	E	L	T	D	P	K	T	G	G	P	L	M	H	R	T	V	L	I	A	N	T	S	N	M	P	V	A	A	R	E	A	S	I	Y	V	G	V	T	I	A	E	Y	F	R	D	Q	G	F	S	V	A	L	M
Template Known Secondary structure			S	S		S								S			T	T	T	T					T	T	G	G	G				T	T	T	T			G	G	G	G								T	T	S																						T	T
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.				.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.
Query SS confidence																																																.	.	.
Query Sequence		M	D	S	L	T	R	Y	A	M	A	Q	R	E	I	A	L	A	I	G	E	P	P	A	T	K	G	Y	P	P	S	V	F	A	K	L	P	A	L	V	E	R	A	G	N	G	I	.	.	.	S	G	G	G	S	I	T	A	F	Y	T	V	L	T	E	G	D	D	Q	Q	D	P	I	A	D	S	A	R	A	I	L
Query Conservation																																																.	.	.
Alig confidence																																																.	.	.
Template Conservation
Template Sequence		A	D	S	T	S	R	W	A	E	A	L	R	E	I	S	S	R	L	E	E	M	P	A	E	E	G	Y	P	P	Y	L	A	A	R	L	A	A	F	Y	E	R	A	G	K	V	I	T	L	G	G	E	E	G	A	V	T	I	V	G	A	V	S	P	P	G	G	D	M	S	E	P	V	T	Q	S	T	L	R	I	V
Template Known Secondary structure			S																T	T					G	G	G			T	T											T							T	T	S														S	S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.								380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure																																		.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.
Query Sequence		D	G	H	I	V	L	S	R	R	L	A	E	A	G	H	Y	P	A	I	D	I	E	A	S	I	S	R	A	M	T	A	L	.	.	.	.	.	.	.	I	S	E	Q	H	Y	A	R	V	R	T	F	K	Q	L	L	S	S	F	Q	R	N	R	D	L	V	S	V	G	A	Y	A	K	G	S	D	P	M	L	D	K
Query Conservation																																		.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.																																		.
Template Conservation																																																																										.
Template Sequence		G	A	F	W	R	L	D	A	S	L	A	F	R	R	H	F	P	A	I	N	W	N	G	S	Y	S	L	F	T	S	A	L	D	P	W	Y	R	E	N	V	A	E	D	Y	P	E	L	R	D	A	I	S	E	L	L	Q	R	E	A	G	L	Q	E	I	V	Q	L	V	G	P	D	A	.	L	Q	D	A	E	R	L
Template Known Secondary structure		S					B							T	T		S	S		B		T	T	T				T	T												T		T	T																											S	T	T	.
Template Predicted Secondary structure																																																																										.
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.		.	.	.	.	480	.	.
		421	.	.	.	.	.	.	.	.	430		.	.	.	.	.	.	.	.					.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure												.									.	.	.	.
Query SS confidence												.									.	.	.	.
Query Sequence		A	I	A	L	W	P	Q	L	E	G	.	Y	L	Q	Q	G	I	F	E	.	.	.	.	R	A	D	W	E	A	S	L	Q	G	L	E	R	I	F	P
Query Conservation												.									.	.	.	.
Alig confidence												.									.	.	.	.
Template Conservation
Template Sequence		V	I	E	V	G	R	I	I	R	E	D	F	L	Q	Q	N	A	Y	H	E	V	D	A	Y	C	S	M	K	K	A	Y	G	I	M	K	M	I	L	A
Template Known Secondary structure													T	T				T	T	S	T	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.