Job Description P52612 Confidence 95.99% Date Thu Jan 5 12:05:51 GMT 2012 Rank 75 Aligned Residues 64 % Identity 19% Template c2zamA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b; PDBTitle: crystal structure of mouse skd1/vps4b apo-form Resolution 3.50 Å

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		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	G	L	F	A	G	S	G	V	G	K	S	V	L	L	G	M	M	A	R	Y	T	R	A	D	V	I	V	V	G	L	I	G	E	R	G	R	E	V	K	D	F	I	E	N	I	L	G	A	E	G	R	A	R	S	V	V	I	A	A	P	A	D	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	L	F	G	P	P	G	T	G	K	S	Y	L	A	K	A	V	A	T	E	A	N	N	S	T	F	F	S	I	S	S	S	D	L	V	S	S	E	K	L	V	K	N	L	F	Q	L	A	R	E	N	K	P	S	I	I	F	I	D	E	I	D	S
Template Known Secondary structure							S	T	T	S													T	T	T									S	T	T	T				T												T		S							S
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions