Job Description P52612 Confidence 100.00% Date Thu Jan 5 12:05:51 GMT 2012 Rank 6 Aligned Residues 416 % Identity 25% Template c2w6jD_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:atp synthase subunit beta, mitochondrial; PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 5. Resolution 3.84 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																																															.
Query SS confidence																																															.
Query Sequence		Y	G	R	L	T	R	A	T	G	L	V	L	E	A	T	G	L	Q	L	P	L	G	A	T	C	V	I	E	R	Q	N	G	S	E	T	H	E	V	E	S	E	V	V	G	F	.	N	G	Q	R	L	F	L	M	P	L	E	E	V	E	G	V	L	P	G	A	R	V	Y	A	K	N	I	S	A	E	G	L	Q	S
Query Conservation																																															.
Alig confidence																																					.	.									.																											.	.	.	.	.	.	.
Template Conservation																																					.	.																																				.	.	.	.	.	.	.
Template Sequence		T	G	R	I	V	A	V	I	G	A	V	V	D	V	Q	F	D	E	G	L	P	P	I	L	N	A	L	E	V	Q	G	R	E	T	R	.	.	L	V	L	E	V	A	Q	H	L	G	E	S	T	V	R	T	I	A	M	D	G	T	E	G	L	V	R	G	Q	K	V	L	D	S	G	.	.	.	.	.	.	.	A
Template Known Secondary structure										T	T							S	S					T	T						S	S		S	S		.	.											T	T							S	S			T	T			T	T							S	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																					.	.																																				.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.								80
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	K	Q	L	P	L	G	P	A	L	L	G	R	V	L	D	G	S	G	K	P	L	D	G	L	P	S	P	D	T	T	E	T	G	A	L	I	T	P	P	F	N	P	L	Q	R	T	P	I	E	H	V	L	D	T	G	V	R	P	I	N	A	L	L	T	V	G	R	G	Q	R	M	G	L	F	A	G	S	G	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	I	R	I	P	V	G	P	E	T	L	G	R	I	M	N	V	I	G	E	P	I	D	E	R	G	P	I	K	T	K	Q	F	A	A	I	H	A	E	A	P	E	F	V	E	M	S	V	E	Q	E	I	L	V	T	G	I	K	V	V	D	L	L	A	P	Y	A	K	G	G	K	I	G	L	F	G	G	A	G	V
Template Known Secondary structure		S						S	G	G	G	B	T					T	T	S		B		S	S	S		S									S							G	G	G											S								S				T	T									T	T	S
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		187	.	.	190	.	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.							.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.																												.	.	.	.	.	.
Query SS confidence														.	.	.																												.	.	.	.	.	.
Query Sequence		G	K	S	V	L	L	G	M	M	A	R	Y	.	.	.	T	R	A	D	V	I	V	V	G	L	I	G	E	R	G	R	E	V	K	D	F	I	E	N	I	L	G	.	.	.	.	.	.	A	E	G	R	A	R	S	V	V	I	A	A	P	A	D	V	S	P	L	L	R	M	Q	G	A	A	Y	A	T	R	I	A
Query Conservation														.	.	.																												.	.	.	.	.	.
Alig confidence														.	.	.																												.	.	.	.	.	.
Template Conservation
Template Sequence		G	K	T	V	L	I	M	E	L	I	N	N	V	A	K	A	H	G	G	Y	S	V	F	A	G	V	G	E	R	T	R	E	G	N	D	L	Y	H	E	M	I	E	S	G	V	I	N	L	K	D	A	T	S	K	V	A	L	V	Y	G	Q	M	N	E	P	P	G	A	R	A	R	V	A	L	T	G	L	T	V	A
Template Known Secondary structure		S												T	T	T	T		S	S								S																	T	S	S		S	S	S	S											T	T	S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		258	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		E	D	F	R	D	R	.	G	Q	H	V	L	L	I	M	D	S	L	T	R	Y	A	M	A	Q	R	E	I	A	L	A	I	G	E	P	P	A	T	K	G	Y	P	P	S	V	F	A	K	L	P	A	L	V	E	R	A	G	N	G	I	S	G	G	G	S	I	T	A	F	Y	T	V	L	T	E	G	D	D	Q	Q
Query Conservation								.
Alig confidence								.																																																				.	.
Template Conservation																																																												.	.
Template Sequence		E	Y	F	R	D	Q	E	G	Q	D	V	L	L	F	I	D	N	I	F	R	F	T	Q	A	G	S	E	V	S	A	L	L	G	R	I	P	S	A	V	G	Y	Q	P	T	L	A	T	D	M	G	T	M	Q	E	R	I	T	T	.	.	T	K	K	G	S	I	T	S	V	Q	A	I	Y	V	P	A	D	D	L	T
Template Known Secondary structure							T	T		S									T												G	G	G	T					G	G	G			T	T										T	T	S	S		.	.		S	S												G	G	G		T	T
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.			.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		D	P	I	A	D	S	A	R	A	I	L	D	G	H	I	V	L	S	R	R	L	A	E	A	G	H	Y	P	A	I	D	I	E	A	S	I	S	R	A	M	T	.	A	L	I	S	E	Q	H	Y	A	R	V	R	T	F	K	Q	L	L	S	S	F	Q	R	N	R	D	L	V	S	V	G	A	Y	A	K	G	S	D
Query Conservation																																											.
Alig confidence																																											.																																				.
Template Conservation																																																																															.
Template Sequence		D	P	A	P	A	T	T	F	A	H	L	D	A	T	T	V	L	S	R	A	I	A	E	L	G	I	Y	P	A	V	D	P	L	D	S	T	S	R	I	M	D	P	N	I	V	G	S	E	H	Y	D	V	A	R	G	V	Q	K	I	L	Q	D	Y	K	S	L	Q	D	I	I	A	I	L	G	M	D	E	.	L	S
Template Known Secondary structure		S							G	G	G		S					B						T	T	T		S	S		B		T	T	S				T	T		S																																		G	G	G	.	S
Template Predicted Secondary structure																																																																															.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.		.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.											.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.
Query Sequence		P	M	L	D	K	A	I	A	L	W	P	Q	L	E	G	Y	L	Q	Q	G	I	.	.	.	.	.	.	.	.	.	.	F	E	R	A	D	W	E	A	S	L	Q	G	L	E	R	I	F	P	T
Query Conservation																							.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	E	D	K	L	T	V	S	R	A	R	K	I	Q	R	F	L	S	Q	P	F	Q	V	A	E	V	F	T	G	H	L	G	K	L	V	P	L	K	E	T	I	K	G	F	Q	Q	I	L	A	G
Template Known Secondary structure																		T					G	G	G					S	S																			T	T
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.