Job Description P52612 Confidence 100.00% Date Thu Jan 5 12:05:51 GMT 2012 Rank 2 Aligned Residues 423 % Identity 22% Template c2r9vA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp synthase subunit alpha; PDBTitle: crystal structure of atp synthase subunit alpha (tm1612) from2 thermotoga maritima at 2.10 a resolution Resolution 2.10 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																														.
Query SS confidence																														.
Query Sequence		A	K	M	A	Q	L	P	A	V	R	R	Y	G	R	L	T	R	A	T	G	L	V	L	E	A	T	G	L	.	Q	L	P	L	G	A	T	C	V	I	E	R	Q	N	G	S	E	T	H	E	V	E	S	E	V	V	G	F	N	G	Q	R	L	F	L	M	P	L	E	E	V	E	G	V	L	P	G	A	R	V	Y
Query Conservation																														.
Alig confidence																														.															.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.
Template Sequence		K	S	F	E	E	K	I	D	L	E	D	T	G	K	V	I	Q	V	G	D	G	I	A	R	A	Y	G	L	N	K	V	X	V	S	E	L	V	E	F	V	E	T	G	.	.	.	.	.	.	V	K	G	V	A	F	N	L	E	E	D	N	V	G	I	I	I	L	G	E	Y	K	D	I	K	E	G	H	T	V	R
Template Known Secondary structure			T	T				S		T	T	T									T	T								T	T			T	T						T	T	T		.	.	.	.	.	.										T	T								S			T	T			T	T
Template Predicted Secondary structure																																													.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.							60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	N	I	S	A	E	G	L	Q	S	G	K	Q	L	P	L	G	P	A	L	L	G	R	V	L	D	G	S	G	K	P	L	D	G	L	P	S	P	D	T	T	E	T	G	A	L	I	T	P	P	F	N	P	L	Q	R	T	P	I	E	H	V	L	D	T	G	V	R	P	I	N	A	L	L	T	V	G	R	G
Query Conservation
Alig confidence					.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.
Template Sequence		R	L	K	.	.	.	.	.	.	.	R	I	I	E	V	P	V	G	E	E	L	L	G	R	V	V	N	P	L	G	E	P	L	D	G	K	G	P	I	N	A	K	N	F	R	P	I	E	I	K	A	P	G	V	I	Y	R	K	P	V	D	T	P	L	Q	T	G	I	K	A	I	D	S	X	I	P	I	G	R	G
Template Known Secondary structure					.	.	.	.	.	.	.								S	G	G	G	T	T					T	T	S		B		S	S	S						S					S							G	G	G	B					S					S								S				T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.
Template SS confidence
		91	.	.								.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		Q	R	M	G	L	F	A	G	S	G	V	G	K	S	V	L	L	G	.	.	M	M	A	R	Y	T	R	A	D	V	I	V	V	G	L	I	G	E	R	G	R	E	V	K	D	F	I	E	N	I	L	G	A	E	G	R	A	R	S	V	V	I	A	A	P	A	D	V	S	P	L	L	R	M	Q	G	A	A	Y	A
Query Conservation																				.	.
Alig confidence																				.	.
Template Conservation
Template Sequence		Q	R	E	L	I	I	G	D	R	Q	T	G	K	T	A	I	A	I	D	T	I	I	N	Q	K	G	Q	G	V	Y	C	I	Y	V	A	I	G	Q	K	K	S	A	I	A	R	I	I	D	K	L	R	Q	Y	G	A	X	E	Y	T	T	V	V	V	A	S	A	S	D	P	A	S	L	Q	Y	I	A	P	Y	A	G
Template Known Secondary structure			B							T	T	S	S											T	T	T	T	T	T									S																T	T	G	G	G	G								T	T	S
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.			.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																																																																		.	.
Query SS confidence																																																																		.	.
Query Sequence		T	R	I	A	E	D	F	R	D	R	G	Q	H	V	L	L	I	M	D	S	L	T	R	Y	A	M	A	Q	R	E	I	A	L	A	I	G	E	P	P	A	T	K	G	Y	P	P	S	V	F	A	K	L	P	A	L	V	E	R	A	G	N	G	I	S	.	.	G	G	G	S	I	T	A	F	Y	T	V	L	T	E
Query Conservation																																																																		.	.
Alig confidence																																																																		.	.
Template Conservation
Template Sequence		C	A	X	G	E	Y	F	A	Y	S	G	R	D	A	L	V	V	Y	D	D	L	S	K	H	A	V	A	Y	R	Q	L	S	L	L	X	R	R	P	P	G	R	E	A	Y	P	G	D	I	F	Y	L	H	S	R	L	L	E	R	A	V	R	L	N	D	K	L	G	G	G	S	L	T	A	L	P	I	V	E	T	Q
Template Known Secondary structure										T	T	T									T														T	S				T	T																	T	T				B		T	T	T	T	S												S
Template Predicted Secondary structure
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	D	Q	Q	D	P	I	A	D	S	A	R	A	I	L	D	G	H	I	V	L	S	R	R	L	A	E	A	G	H	Y	P	A	I	D	I	E	A	S	I	S	R	A	M	T	A	L	I	S	E	Q	H	Y	A	R	V	R	T	F	K	Q	L	L	S	S	F	Q	R	N	R	D	L	V	S	V	G	A	Y	A
Query Conservation
Alig confidence																																																																																.	.
Template Conservation																																																																																.	.
Template Sequence		A	N	D	I	S	A	Y	I	P	T	N	V	I	S	I	T	D	G	Q	I	Y	L	E	P	G	L	F	Y	A	G	Q	R	P	A	I	N	V	G	L	S	V	S	R	V	G	G	S	A	Q	I	K	A	X	K	Q	V	A	G	X	L	R	I	D	L	A	Q	Y	R	E	L	E	T	F	A	Q	F	A	T	.	.
Template Known Secondary structure		T	T		T	T	S									T	S	S					B								T		S	S		B		T	T	T				G	G	G	T	T	T	S																							T	T	G	G	G		S	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		412	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	S	D	P	M	L	D	K	A	I	A	L	W	P	Q	L	E	G	Y	L	Q	Q	G	I	F	E	R	A	D	W	E	A	S	L	Q	G	L	E	R	I	F	P	T
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	E	L	D	P	A	T	R	A	Q	I	I	R	G	Q	R	L	X	E	L	L	K	Q	E	Q	Y	S	P	X	P	V	E	E	Q	V	V	V	L	F	A	G	V	R	G
Template Known Secondary structure		.																				T				T	T																	T	T
Template Predicted Secondary structure		.
Template SS confidence
			402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.