Job Description P52612 Confidence 100.00% Date Thu Jan 5 12:05:51 GMT 2012 Rank 5 Aligned Residues 413 % Identity 24% Template c2qe7C_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:atp synthase subunit alpha; PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1 Resolution 3.06 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		R	Y	G	R	L	T	R	A	T	G	L	V	L	E	A	T	G	L	.	Q	L	P	L	G	A	T	C	V	I	E	R	Q	N	G	S	E	T	H	E	V	E	S	E	V	V	G	F	N	G	Q	R	L	F	L	M	P	L	E	E	V	E	G	V	L	P	G	A	R	V	Y	A	K	N	I	S	A	E	G	L	Q
Query Conservation																				.
Alig confidence																				.														.	.	.	.	.	.	.																																			.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.																																			.	.	.	.	.	.	.
Template Sequence		E	V	G	T	V	I	Q	V	G	D	G	I	A	R	V	H	G	L	E	K	V	M	A	G	E	L	L	E	F	E	N	G	.	.	.	.	.	.	.	V	M	G	M	A	Q	N	L	E	E	D	N	V	G	V	V	I	L	G	P	Y	T	E	I	R	E	G	T	Q	V	K	R	T	G	.	.	.	.	.	.	.
Template Known Secondary structure											T	T								T	T			T	T						T	T	S	.	.	.	.	.	.	.										T	T								S			T	T			T	T								.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.																																			.	.	.	.	.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.								.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	G	K	Q	L	P	L	G	P	A	L	L	G	R	V	L	D	G	S	G	K	P	L	D	G	L	P	S	P	D	T	T	E	T	G	A	L	I	T	P	P	F	N	P	L	Q	R	T	P	I	E	H	V	L	D	T	G	V	R	P	I	N	A	L	L	T	V	G	R	G	Q	R	M	G	L	F	A	G	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	M	E	V	P	V	G	E	A	L	L	G	R	V	V	N	P	L	G	Q	P	L	D	G	R	G	P	I	E	T	A	E	Y	R	P	I	E	S	P	A	P	G	V	M	D	R	K	S	V	H	E	P	L	Q	T	G	I	K	A	I	D	S	M	I	P	I	G	R	G	Q	R	E	L	I	I	G	D	R	Q
Template Known Secondary structure				S					S	G	G	G	T	T					T	T			B	S	S		S											S	S						T	T	S	B					S	B				S							S	S			B	T	T		B							S	S
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		186	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		V	G	K	S	V	L	L	G	.	.	M	M	A	R	Y	T	R	A	D	V	I	V	V	G	L	I	G	E	R	G	R	E	V	K	D	F	I	E	N	I	L	G	A	E	G	R	A	R	S	V	V	I	A	A	P	A	D	V	S	P	L	L	R	M	Q	G	A	A	Y	A	T	R	I	A	E	D	F	R	D	R
Query Conservation										.	.
Alig confidence										.	.
Template Conservation
Template Sequence		T	G	K	T	T	I	A	I	D	T	I	I	N	Q	K	G	Q	D	V	I	C	I	Y	V	A	I	G	Q	K	Q	S	T	V	A	G	V	V	E	T	L	R	Q	H	D	A	L	D	Y	T	I	V	V	T	A	S	A	S	E	P	A	P	L	L	Y	L	A	P	Y	A	G	C	A	M	G	E	Y	F	M	Y	K
Template Known Secondary structure		S	S											G	G	G	S		S									S																T	T		S	T	T								T	T	S																					T	T
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.			.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
Predicted Secondary structure																																																								.	.
Query SS confidence																																																								.	.
Query Sequence		G	Q	H	V	L	L	I	M	D	S	L	T	R	Y	A	M	A	Q	R	E	I	A	L	A	I	G	E	P	P	A	T	K	G	Y	P	P	S	V	F	A	K	L	P	A	L	V	E	R	A	G	N	G	I	S	.	.	G	G	G	S	I	T	A	F	Y	T	V	L	T	E	G	D	D	Q	Q	D	P	I	A	D
Query Conservation																																																								.	.
Alig confidence																																																								.	.
Template Conservation
Template Sequence		G	K	H	A	L	V	V	Y	D	D	L	S	K	Q	A	A	A	Y	R	E	L	S	L	L	L	R	R	P	P	G	R	E	A	Y	P	G	D	V	F	Y	L	H	S	R	L	L	E	R	A	A	K	L	S	D	E	K	G	G	G	S	L	T	A	L	P	F	I	E	T	Q	A	G	D	V	S	A	Y	I	P	T
Template Known Secondary structure		T																								T	T					S	T	T	S		T	T										T	S			B	B		T	T	T	T													S	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	R	A	I	L	D	G	H	I	V	L	S	R	R	L	A	E	A	G	H	Y	P	A	I	D	I	E	A	S	I	S	R	A	M	T	A	L	I	S	E	Q	H	Y	A	R	V	R	T	F	K	Q	L	L	S	S	F	Q	R	N	R	D	L	V	S	V	G	A	Y	A	K	G	S	D	P	M	L	D	K	A
Query Conservation
Alig confidence																																																																								.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		N	V	I	S	I	T	D	G	Q	I	F	L	E	S	D	L	F	Y	S	G	V	R	P	A	V	N	V	G	I	S	V	S	R	V	G	G	A	A	Q	I	K	A	M	K	K	V	A	G	T	L	R	L	D	L	A	Q	Y	R	E	L	Q	A	F	A	Q	F	G	S	D	L	.	.	.	D	K	A	T	Q	A	K
Template Known Secondary structure					T	T	S	S											T	T	T		S	S		B		T	T	T				S	S	G	G	G	G	S																					G	G	G	S	T	T					T	.	.	.	T	T	T	T	T	T	T
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.				.	.	.	.	.	.	.
		422	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	L	W	P	Q	L	E	G	Y	L	Q	Q	G	I	F	E	R	A	D	W	E	A	S	L	Q	G	L	E	R	I	F	P	T	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	N	R	G	E	R	T	V	E	I	L	K	Q	D	E	H	K	P	M	P	V	E	E	Q	V	I	S	I	Y	A	V	T	N	G	F
Template Known Secondary structure																T	T																	T	T	T
Template Predicted Secondary structure
Template SS confidence
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.