Job Description P52612 Confidence 100.00% Date Thu Jan 5 12:05:51 GMT 2012 Rank 14 Aligned Residues 398 % Identity 27% Template c2c61A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:a-type atp synthase non-catalytic subunit b; PDBTitle: crystal structure of the non-catalytic b subunit of a-type2 atpase from m. mazei go1 Resolution 1.5 Å

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		36	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		G	L	V	L	E	A	T	G	L	.	Q	L	P	L	G	A	T	C	V	I	E	R	Q	N	G	S	E	T	H	E	V	E	S	E	V	V	G	F	N	G	Q	R	L	F	L	M	P	L	E	E	V	E	G	V	L	P	G	A	R	V	Y	A	K	N	I	S	A	E	G	L	Q	S	G	K	Q	L	P	L	G	P
Query Conservation											.
Alig confidence											.																.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.
Template Conservation																											.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.
Template Sequence		G	P	L	I	F	V	E	K	T	E	P	V	G	Y	N	E	I	V	N	I	K	M	G	D	G	.	.	.	T	V	R	R	G	Q	V	L	D	S	S	A	D	I	V	V	V	Q	V	F	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	G	.	.	.	.	.	.	.	E	T	L	K	L	P	A	S	V
Template Known Secondary structure											S				T	T								T	T	S	.	.	.												S	S								.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.		B							G
Template Predicted Secondary structure																											.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.				.	.	.	.	.	.	.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.				.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.														.	.	60								.	.	.	.	.	.	.	.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	L	G	R	V	L	D	G	S	G	K	P	L	D	G	L	P	S	P	D	T	T	E	T	G	A	L	I	T	P	P	F	N	P	L	Q	R	T	P	I	E	H	V	L	D	T	G	V	R	P	I	N	A	L	L	T	V	G	R	G	Q	R	M	G	L	F	A	G	S	G	V	G	K	S	V	L	L	G	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	L	L	G	R	I	L	S	G	S	G	E	P	R	D	G	G	P	R	I	V	P	D	Q	L	L	D	I	N	G	A	A	M	N	P	Y	A	R	L	P	P	K	D	F	I	Q	T	G	I	S	T	I	D	G	T	N	T	L	V	R	G	Q	K	L	P	I	F	S	A	S	G	L	P	H	N	E	I	A	L	Q
Template Known Secondary structure		G	G	T	T					T	T	S		B	S	S	S							S					S	S	S		S	S			B		S					S	B		B		S						T	T	S			B	T	T		B							T	T	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		195	.	.	.	.							200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.																																																															.
Query SS confidence							.	.	.	.	.	.																																																															.
Query Sequence		M	A	R	Y	T	.	.	.	.	.	.	R	A	D	V	I	V	V	G	L	I	G	E	R	G	R	E	V	K	D	F	I	E	N	I	L	G	A	E	G	R	A	R	S	V	V	I	A	A	P	A	D	V	S	P	L	L	R	M	Q	G	A	A	Y	A	T	R	I	A	E	D	F	R	.	D	R	G	Q	H	V
Query Conservation							.	.	.	.	.	.																																																															.
Alig confidence							.	.	.	.	.	.																																																															.
Template Conservation
Template Sequence		I	A	R	Q	A	S	V	P	G	S	E	S	A	F	A	V	V	F	A	A	M	G	I	T	N	E	E	A	Q	Y	F	M	S	D	F	E	K	T	G	A	L	E	R	A	V	V	F	L	N	L	A	D	D	P	A	V	E	R	I	V	T	P	R	M	A	L	T	A	A	E	Y	L	A	Y	E	H	G	M	H	V
Template Known Secondary structure							B		T	T		S	S																											S	G	G	G	G								T	T	S
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	I	M	D	S	L	T	R	Y	A	M	A	Q	R	E	I	A	L	A	I	G	E	P	P	A	T	K	G	Y	P	P	S	V	F	A	K	L	P	A	L	V	E	R	A	G	N	G	I	S	G	G	G	S	I	T	A	F	Y	T	V	L	T	E	G	D	D	Q	Q	D	P	I	A	D	S	A	R	A	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	V	I	L	T	D	I	T	N	Y	A	E	A	L	R	Q	M	G	A	A	R	N	E	V	P	G	R	R	G	Y	P	G	Y	M	Y	T	D	L	A	T	L	Y	E	R	A	G	I	V	K	G	A	K	G	S	V	T	Q	I	P	I	L	S	M	P	G	D	D	I	T	H	P	I	P	D	L	S	G	Y	I	T
Template Known Secondary structure																T	T	S	G	G	G	T	T			T	T	S	T	T			T											T	S				B	T	T	S	S													S		T	T	T	S						G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.						.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure																																				.	.	.	.	.
Query SS confidence																																				.	.	.	.	.
Query Sequence		D	G	H	I	V	L	S	R	R	L	A	E	A	G	H	Y	P	A	I	D	I	E	A	S	I	S	R	A	M	T	A	L	I	S	.	.	.	.	.	E	Q	H	Y	A	R	V	R	T	F	K	Q	L	L	S	S	F	Q	R	N	R	D	L	V	S	V	G	A	Y	A	K	G	S	D	P	M	L	D	K	A	I
Query Conservation																																				.	.	.	.	.
Alig confidence																																				.	.	.	.	.
Template Conservation
Template Sequence		E	G	Q	I	V	V	A	R	E	L	H	R	K	G	I	Y	P	P	I	N	V	L	P	S	L	S	R	L	M	N	S	G	I	G	A	G	K	T	R	E	D	H	K	A	V	S	D	Q	M	Y	A	G	Y	A	E	G	R	D	L	R	G	L	V	A	I	V	G	K	E	A	L	S	E	R	D	T	K	F	L	E
Template Known Secondary structure		T					B							T	T		S	S		B		T	T	T				T	T	G	G	G	S		S	T	T	T	S		T	T																											G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	W	P	Q	L	E	G	Y	L	Q	Q	G	I	F	E	R	A	D	W	E	A	S	L	Q	G	L	E	R	I	F	P	T	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	A	D	L	F	E	D	K	F	V	R	Q	G	R	N	E	N	R	T	I	E	D	T	L	E	I	G	W	Q	I	L	T	H	L
Template Known Secondary structure										T	T				T	T																	T	T	S
Template Predicted Secondary structure
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.