 |
Job Description | P52612 | Confidence | 96.05% | Date | Thu Jan 5 12:05:51 GMT 2012 |
Rank | 74 | Aligned Residues | 101 |
% Identity | 17% | Template | c2a5yB_ |
PDB info |
PDB header:apoptosis | Chain: B: PDB Molecule:ced-4; |
PDBTitle: structure of a ced-4/ced-9 complex
|
Resolution | 2.60 Å |
|
 |
  |   |
164 | . | . | . | . | . | 170 | . | . | . | |
|
. | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | |
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | |
|
|
|
|
. | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
| . | . |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |
|
|
|  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | P | I | N | A | L | L | T | V | G | . |
. |
R | G | Q | R | M | G | L | F | A | G | S | G | V | G | K | S | V | L | L | G | M | M | A | R | Y | T | R | . |
. |
. |
. |
. |
. |
A | D | V | I | V | V | G | L | I | G | E | R | G | R | E | . |
. |
. |
. |
. |
V | K | D | F | I | E | N | I | L | G | A | E | G | R | A |
Query Conservation |   |
|
|
|
|   |
|   |
|
|
| . | . |   |
|
|
|   |   |
|   |
|   |   |
|   |
|
|
|   |
|
|   |   |
|
|   |   |   |   | . | . | . | . | . | . |   |
|
|   |
|   |   |
|
|
|
|
|   |   |
| . | . | . | . | . |
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
Template Conservation |   |
  |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|   |
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   | . | . | . |
Template Sequence |   |
R | V | I | K | K | L | D | E | M | C | D | L | D | S | F | F | L | F | L | H | G | R | A | G | S | G | K | S | V | I | A | S | Q | A | L | S | K | S | D | Q | L | I | G | I | N | Y | D | S | I | V | W | L | K | D | S | G | T | A | P | K | S | T | F | D | L | F | T | D | I | L | L | M | L | K | S | E | D | . |
. |
. |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | T | S | S | S |  |  |  |  |  |  |
| S | T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |
| S | S | T | B | T | T | T | B | S |  |  |  |  |  |  |
|
|
|
| S | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | S | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
139 | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | |
|
|
  |
  |   |
231 | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | S | V | V | I | A | A | P | A | D | V | S | P | L | L | R | M | Q | G | A | A | Y | A | T | R | I | A | E | D | F | R | D | R | G | Q | H | V | L | L | I | M | D | S | L |
Query Conservation |   |
|
|
|
|
|   |   |
|
|
|   |   |   |   |   |
|   |   |
|   |   |   |
|   |
|
|
|
|
|
|
|
|   |
|   |   |
|
|
|
|   |
|
|
|
Alig confidence |   |
. | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|
|   |
|
|
|
|
|
|
|
Template Sequence |   |
. |
. |
. |
. |
. |
. |
. |
D | L | L | N | F | P | S | V | E | H | V | T | S | V | V | L | K | R | M | I | C | N | A | L | I | D | R | P | N | T | L | F | V | F | D | D | V |
Template Known Secondary structure |   |
. | . | . | . | . | . | . |
|
| T | T |
|
|
|
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | T | T |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
. | . | . | . | . | . | . |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
|
216 | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|