Job Description P52612 Confidence 100.00% Date Thu Jan 5 12:05:51 GMT 2012 Rank 9 Aligned Residues 417 % Identity 26% Template c1skyE_ PDB info PDB header:atp synthase Chain: E: PDB Molecule:f1-atpase; PDBTitle: crystal structure of the nucleotide free alpha3beta3 sub-complex of2 f1-atpase from the thermophilic bacillus ps3 Resolution 3.20 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.	.	.	.	.					.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure																					.	.	.											.	.	.	.
Query SS confidence																					.	.	.											.	.	.	.
Query Sequence		G	R	L	T	R	A	T	G	L	V	L	E	A	T	G	L	Q	L	P	.	.	.	L	G	A	T	C	V	I	E	R	Q	.	.	.	.	N	G	S	E	T	H	E	V	E	S	E	V	V	G	F	N	G	Q	R	L	F	L	M	P	L	E	E	V	E	G	V	L	P	G	A	R	V	Y	A	K	N	I	S	A
Query Conservation																					.	.	.											.	.	.	.
Alig confidence																					.	.	.											.	.	.	.																																										.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		G	R	V	I	Q	V	M	G	P	V	V	D	V	K	F	E	N	G	H	L	P	A	I	Y	N	A	L	K	I	Q	H	K	A	R	N	E	N	E	V	D	I	D	L	T	L	E	V	A	L	H	L	G	D	D	T	V	R	T	I	A	M	A	S	T	D	G	L	I	R	G	M	E	V	I	D	T	G	.	.	.
Template Known Secondary structure									T	T							S	T	T					T	T										S	S	T	T																T	T							S	S			T	T			T	T								.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		E	G	L	Q	S	G	K	Q	L	P	L	G	P	A	L	L	G	R	V	L	D	G	S	G	K	P	L	D	G	L	P	S	P	.	D	T	T	E	T	G	A	L	I	T	P	P	F	N	P	L	Q	R	T	P	I	E	H	V	L	D	T	G	V	R	P	I	N	A	L	L	T	V	G	R	G	Q	R	M	G	L
Query Conservation																																			.
Alig confidence		.	.	.	.																														.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	A	P	I	S	V	P	V	G	Q	V	T	L	G	R	V	F	N	V	L	G	E	P	I	D	L	E	G	D	I	P	A	D	A	R	R	D	P	I	H	R	P	A	P	K	F	E	E	L	A	T	E	V	E	I	L	E	T	G	I	K	V	V	D	L	L	A	P	Y	I	K	G	G	K	I	G	L
Template Known Secondary structure		.	.	.	.								S	G	G	G	T	T					T	T	S		B		S	S	S					T	T	S					S							G	G	G	B			S							S								S				T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.				200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		F	A	G	S	G	V	G	K	S	V	L	L	G	M	M	A	R	Y	T	.	.	.	R	A	D	V	I	V	V	G	L	I	G	E	R	G	R	E	V	K	D	F	I	E	N	I	L	G	A	E	G	R	A	R	S	V	V	I	A	A	P	A	D	V	S	P	L	L	R	M	Q	G	A	A	Y	A	T	R	I	A
Query Conservation																					.	.	.
Alig confidence																					.	.	.
Template Conservation
Template Sequence		F	G	G	A	G	V	G	K	T	V	L	I	Q	E	L	I	H	N	I	A	Q	E	H	G	G	I	S	V	F	A	G	V	G	E	R	T	R	E	G	N	D	L	Y	H	E	M	K	D	S	G	V	I	S	K	T	A	M	V	F	G	Q	M	N	E	P	P	G	A	R	M	R	V	A	L	T	G	L	T	M	A
Template Known Secondary structure					S	S	S																	T										S	S															T	S	G	G	G	G								T	T	S
Template Predicted Secondary structure
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		258	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure							.
Query SS confidence							.
Query Sequence		E	D	F	R	D	.	R	G	Q	H	V	L	L	I	M	D	S	L	T	R	Y	A	M	A	Q	R	E	I	A	L	A	I	G	E	P	P	A	T	K	G	Y	P	P	S	V	F	A	K	L	P	A	L	V	E	R	A	G	N	G	I	S	G	G	G	S	I	T	A	F	Y	T	V	L	T	E	G	D	D	Q	Q
Query Conservation							.
Alig confidence							.																																																					.	.
Template Conservation																																																												.	.
Template Sequence		E	Y	F	R	D	E	Q	G	Q	D	G	L	L	F	I	D	N	I	F	R	F	T	Q	A	G	S	E	V	S	A	L	L	G	R	M	P	S	A	I	G	Y	Q	P	T	L	A	T	E	M	G	Q	L	Q	E	R	I	T	S	.	.	T	A	K	G	S	I	T	S	I	Q	A	I	Y	V	P	A	D	D	Y	T
Template Known Secondary structure								S											T															T					G	G	G			T	T										T	T	S	S		.	.	B	S	S												S	T	T		S	S
Template Predicted Secondary structure																																																												.	.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.			.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		D	P	I	A	D	S	A	R	A	I	L	D	G	H	I	V	L	S	R	R	L	A	E	A	G	H	Y	P	A	I	D	I	E	A	S	I	S	R	A	M	T	.	A	L	I	S	E	Q	H	Y	A	R	V	R	T	F	K	Q	L	L	S	S	F	Q	R	N	R	D	L	V	S	V	G	A	Y	A	K	G	S	D
Query Conservation																																											.
Alig confidence																																											.
Template Conservation
Template Sequence		D	P	A	P	A	T	T	F	S	H	L	D	A	T	T	N	L	E	R	K	L	A	E	M	G	I	Y	P	A	V	D	P	L	V	S	T	S	R	A	L	A	P	E	I	V	G	E	E	H	Y	Q	V	A	R	K	V	Q	Q	T	L	E	R	Y	K	E	L	Q	D	I	I	A	I	L	G	M	D	E	L	S	D
Template Known Secondary structure		S								T	T		S					B		T	T					T		S	S		B		T	T	T			B	T	T																																				S	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.											.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.
Query Sequence		P	M	L	D	K	A	I	A	L	W	P	Q	L	E	G	Y	L	Q	Q	.	.	.	.	.	.	.	.	.	.	G	I	F	E	R	A	D	W	E	A	S	L	Q	G	L	E	R	I	F	P	T
Query Conservation																					.	.	.	.	.	.	.	.	.	.
Alig confidence		.																			.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	E	D	K	L	V	V	H	R	A	R	R	I	Q	F	F	L	S	Q	N	F	H	V	A	E	Q	F	T	G	Q	P	G	S	Y	V	P	V	K	E	T	V	R	G	F	K	E	I	L	E	G
Template Known Secondary structure		.																T		B			T	T	T					S																				T	T
Template Predicted Secondary structure		.
Template SS confidence
			395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.