Job Description P52612 Confidence 100.00% Date Thu Jan 5 12:05:51 GMT 2012 Rank 3 Aligned Residues 418 % Identity 28% Template c1fx0B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:atp synthase beta chain; PDBTitle: crystal structure of the chloroplast f1-atpase from spinach Resolution 3.20 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.				.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																						.	.	.														.												.
Query SS confidence																						.	.	.														.												.
Query Sequence		Y	G	R	L	T	R	A	T	G	L	V	L	E	A	T	G	L	Q	L	P	.	.	.	L	G	A	T	C	V	I	E	R	Q	N	G	S	.	E	T	H	E	V	E	S	E	V	V	G	.	F	N	G	Q	R	L	F	L	M	P	L	E	E	V	E	G	V	L	P	G	A	R	V	Y	A	K	N	I	S	A	E
Query Conservation																						.	.	.														.												.
Alig confidence																						.	.	.														.												.																												.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		L	G	R	I	A	Q	I	I	G	P	V	L	N	V	A	F	P	P	G	K	M	P	N	I	Y	N	A	L	I	V	K	G	R	D	T	A	G	Q	P	M	N	V	T	C	E	V	Q	Q	L	L	G	N	N	R	V	R	A	V	A	M	S	A	T	D	G	L	T	R	G	M	E	V	I	D	T	G	.	.	.	.
Template Known Secondary structure										T	T								S	S					T	T									S	S	S	S														S	S	S							S	S			T	T			T	T							S	.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	Q	S	G	K	Q	L	P	L	G	P	A	L	L	G	R	V	L	D	G	S	G	K	P	L	D	G	L	P	S	P	D	T	T	E	T	G	A	L	I	T	P	P	F	N	P	L	Q	R	T	P	I	E	H	V	L	D	T	G	V	R	P	I	N	A	L	L	T	V	G	R	G	Q	R	M	G	L	F	A
Query Conservation
Alig confidence		.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	A	P	L	S	V	P	V	G	G	P	T	L	G	R	I	F	N	V	L	G	E	P	V	D	N	L	R	P	V	D	T	R	T	T	S	P	I	H	R	S	A	P	A	F	T	Q	L	D	T	K	L	S	I	F	E	T	G	I	K	V	V	N	L	L	A	P	Y	R	R	G	G	K	I	G	L	F	G
Template Known Secondary structure		.	.	.	S	S						S	S	T	T	T	T					T	T	S		B		S	S	S	S					S					S							G	G	G											S		T	T					S				T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.				.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.								230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure																		.	.	.																																.	.	.	.	.	.	.
Query SS confidence																		.	.	.																																.	.	.	.	.	.	.
Query Sequence		G	S	G	V	G	K	S	V	L	L	G	M	M	A	R	Y	.	.	.	T	R	A	D	V	I	V	V	G	L	I	G	E	R	G	R	E	V	K	D	F	I	E	N	I	L	G	A	E	G	R	.	.	.	.	.	.	.	A	R	S	V	V	I	A	A	P	A	D	V	S	P	L	L	R	M	Q	G	A	A	Y
Query Conservation																		.	.	.																																.	.	.	.	.	.	.
Alig confidence																		.	.	.																																.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	G	V	G	K	T	V	L	I	M	E	L	I	N	N	I	A	K	A	H	G	G	V	S	V	F	G	G	V	G	E	R	T	R	E	G	N	D	L	Y	M	E	M	K	E	S	G	V	I	N	E	Q	N	I	A	E	S	K	V	A	L	V	Y	G	Q	M	N	E	P	P	G	A	R	M	R	V	G	L	T
Template Known Secondary structure			S	S	S	S												T	T	T	T		S	S								S			S													T	T	S	S		S	S	T	T												T	T	S						T	T
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		253	.	.	.	.	.	.	260	.	.		.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		A	T	R	I	A	E	D	F	R	D	.	R	G	Q	H	V	L	L	I	M	D	S	L	T	R	Y	A	M	A	Q	R	E	I	A	L	A	I	G	E	P	P	A	T	K	G	Y	P	P	S	V	F	A	K	L	P	A	L	V	E	R	A	G	N	G	I	S	G	G	G	S	I	T	A	F	Y	T	V	L	T	E
Query Conservation												.
Alig confidence												.																																																					.	.
Template Conservation																																																																	.	.
Template Sequence		A	L	T	M	A	E	Y	F	R	D	V	N	E	Q	D	V	L	L	F	I	D	N	I	F	R	F	V	Q	A	G	S	E	V	S	A	L	L	G	R	M	P	S	A	V	G	Y	Q	P	T	L	S	T	E	M	G	S	L	Q	E	R	I	T	S	.	.	T	K	E	G	S	I	T	S	I	Q	A	V	Y	V	P
Template Known Secondary structure					T					T	T	T	S											S															T					G	G	G			T	T								T	S	S	S	S	S		.	.		T	T												G
Template Predicted Secondary structure																																																																	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.			.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.		.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		G	D	D	Q	Q	D	P	I	A	D	S	A	R	A	I	L	D	G	H	I	V	L	S	R	R	L	A	E	A	G	H	Y	P	A	I	D	I	E	A	S	I	S	R	A	M	T	A	.	L	I	S	E	Q	H	Y	A	R	V	R	T	F	K	Q	L	L	S	S	F	Q	R	N	R	D	L	V	S	V	G	A	Y
Query Conservation																																																	.
Alig confidence																																																	.
Template Conservation
Template Sequence		A	D	D	L	T	D	P	A	P	A	T	T	F	A	H	L	D	A	T	T	V	L	S	R	G	L	A	A	K	G	I	Y	P	A	V	D	P	L	D	S	T	S	T	M	L	Q	P	R	I	V	G	E	E	H	Y	E	I	A	Q	R	V	K	E	T	L	Q	R	Y	K	E	L	Q	D	I	I	A	I	L	G	L
Template Known Secondary structure		G	G		S	S	S								T	T		S					B		S	T	T	T	T	T	T		S	S		B		S	S	S			B	T	T		S	T	T	T	T																														S
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.											.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.
Query Sequence		A	K	G	S	D	P	M	L	D	K	A	I	A	L	W	P	Q	L	E	G	Y	L	Q	Q	G	I	F	.	.	.	.	.	.	.	.	.	.	E	R	A	D	W	E	A	S	L	Q	G	L	E	R	I	F	P	T
Query Conservation																													.	.	.	.	.	.	.	.	.	.
Alig confidence									.																				.	.	.	.	.	.	.	.	.	.
Template Conservation									.
Template Sequence		D	E	L	S	E	E	D	.	R	L	T	V	A	R	A	R	K	I	E	R	F	L	S	Q	P	F	F	V	A	E	V	F	T	G	S	P	G	K	Y	V	G	L	A	E	T	I	R	G	F	Q	L	I	L	S	G
Template Known Secondary structure		T	T	S		T	T	T	.														T					S	S		T	T	T	S		S																T	T	T	T	T
Template Predicted Secondary structure									.
Template SS confidence
		411	.	.	.	.	.	.		.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.