Job Description Q5H772 Confidence 99.94% Date Thu Jan 5 12:37:18 GMT 2012 Rank 114 Aligned Residues 350 % Identity 11% Template c3rq1A_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase class i and ii; PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula Resolution 2.20 Å

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		38	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure						.																.	.																	.
Query SS confidence						.																.	.																	.
Query Sequence		E	G	N	E	.	Y	I	D	F	A	A	G	I	A	V	L	N	T	G	H	.	.	R	H	P	D	L	V	A	A	V	E	Q	Q	L	Q	Q	F	.	T	H	T	A	Y	Q	I	V	P	Y	E	S	Y	V	T	L	A	E	K	I	N	A	L	A	P	V	S	G	Q	A	K	T	A	F	F	T	T	G	A	E	A
Query Conservation						.																.	.																	.
Alig confidence						.																.	.																	.
Template Conservation
Template Sequence		N	G	R	E	N	V	V	N	G	T	L	G	A	I	H	D	E	E	G	N	L	V	F	L	K	T	V	K	E	E	Y	L	S	L	S	D	S	E	H	V	G	Y	A	P	I	A	G	I	P	D	F	L	C	A	A	E	K	E	C	F	G	N	F	R	P	E	G	H	I	R	S	I	A	T	A	G	G	T	G	G
Template Known Secondary structure				G	G	G						S	S			B		T	T	S		B												T								S				T	T															G	G	G			S	S								S
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	N	A	V	K	I	A	R	A	H	T	G	R	P	G	V	I	A	F	S	G	G	F	H	G	R	T	Y	M	T	M	A	L	T	G	K	V	A	P	Y	K	I	G	F	G	P	F	P	G	S	V	Y	H	V	P	Y	P	S	D	L	H	G	I	S	T	Q	D	S	L	D	A	I	E	R	L	F	K	S	D
Query Conservation
Alig confidence										.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	H	H	L	I	H	N	Y	.	.	.	T	E	P	G	D	E	V	L	T	A	D	W	Y	W	G	A	Y	R	V	I	C	S	D	T	G	R	T	L	V	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	L	F	D	E	H	N	N	F	N	H	E	A	F	Q	N	R	V	N	E	L
Template Known Secondary structure										.	.	.	S		T	T							S	S			T									T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	B		T	T	S	S	B
Template Predicted Secondary structure										.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		112	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.																		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230							.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Query Sequence		I	E	A	K	Q	V	A	A	I	I	F	E	P	V	Q	G	E	G	G	F	N	V	A	P	K	E	L	V	A	A	I	R	R	L	C	D	E	.	.	.	.	.	.	H	G	I	V	M	I	A	D	E	V	Q	S	G	F	A	R	T	G	K	L	F	A	M	D	H	Y	A	D	K	.	.	.	.	.	.	.	.
Query Conservation																																							.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	K	Q	T	N	V	V	V	I	F	N	T	P	G	N	N	P	T	G	Y	S	I	E	D	K	D	W	D	S	I	L	N	F	L	K	D	L	V	A	I	G	R	N	N	V	I	I	G	I	D	V	A	Y	L	D	Y	S	G	E	K	D	E	V	R	A	F	F	N	K	F	S	H	L	P	K	E	I	L	T
Template Known Secondary structure						S									S	S		T	T	T																						T	S	S										T	T	G	G	G	S	S							G	G	G	G	G	G	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
		260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.								.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.					320	.	.	.	.	.	.	.
Predicted Secondary structure													.												.	.	.	.	.	.	.																																							.	.	.	.
Query SS confidence													.												.	.	.	.	.	.	.																																							.	.	.	.
Query Sequence		P	D	L	M	T	M	A	K	S	L	A	.	G	G	M	P	L	S	G	V	V	G	N	.	.	.	.	.	.	.	A	N	I	M	D	A	P	A	P	G	G	L	G	G	T	Y	A	G	N	P	L	A	V	A	A	A	H	A	V	L	N	I	I	D	K	E	S	L	.	.	.	.	C	E	R	A	N	Q	L	G
Query Conservation													.												.	.	.	.	.	.	.																																							.	.	.	.
Alig confidence													.												.	.	.	.	.	.	.																																							.	.	.	.
Template Conservation
Template Sequence		C	V	C	Y	S	L	S	K	G	F	T	X	Y	G	Q	R	V	G	A	X	I	G	I	S	D	D	E	E	I	A	D	E	F	F	E	V	N	K	S	T	S	R	A	T	W	S	N	I	C	R	P	A	X	R	T	X	A	N	I	V	A	D	P	A	K	F	K	E	Y	E	A	E	R	N	C	Y	Y	Q	L	I
Template Known Secondary structure							S	T	T	T	T	T			S	S										S	S																			T	S	S														T
Template Predicted Secondary structure
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	L	K	N	T	L	I	D	A	K	E	S	V	P	A	I	A	A	V	R	G	L	G	S	M	I	A	V	E	F	N	D	P	Q	T	G	E	P	S	A	A	I	A	Q	K	I	Q	Q	R	A	L	A	Q	G	L	L	L	L	T	C	G	A	Y	G	N	V	I	R	F	L	Y	P	L	T	I	P	D	A	Q
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.	.	.																		.	.	.											.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.																		.	.	.											.
Template Sequence		R	D	R	A	D	I	F	K	Q	E	A	A	Q	V	G	L	P	X	L	P	Y	R	G	G	F	F	I	T	I	P	T	D	S	.	.	.	.	.	.	.	.	.	.	A	N	A	I	C	E	E	L	K	K	E	H	I	Y	V	I	A	.	.	.	L	A	N	G	I	R	I	A	A	C	.	G	I	P	K	C	Q
Template Known Secondary structure																T								S	S	S							T	T	.	.	.	.	.	.	.	.	.	.											T	T						.	.	.		S	S						G	G	.	G	S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.																		.	.	.											.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.											.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.				.	.	.	.	.	.	.	.	390	.		.	.	.	.	.	.
		408	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	A	A	M	K	I	L	Q	D	A	L	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		X	T	G	L	A	E	K	I	Y	N	A	X	K	S
Template Known Secondary structure			T	T
Template Predicted Secondary structure
Template SS confidence
		398	.	400	.	.	.	.	.	.	.	.	.	410	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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