Job Description Q5H772 Confidence 99.81% Date Thu Jan 5 12:37:18 GMT 2012 Rank 207 Aligned Residues 330 % Identity 12% Template c3n0lA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni Resolution 1.80 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.					.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.
Predicted Secondary structure																																		.	.	.	.																								.													.
Query SS confidence																																		.	.	.	.																								.													.
Query Sequence		N	E	Y	I	D	F	A	A	G	I	A	V	L	N	T	G	H	R	H	P	D	L	V	A	A	V	E	Q	Q	L	Q	Q	.	.	.	.	F	T	H	T	A	Y	Q	I	V	P	Y	E	S	Y	V	T	L	A	E	K	I	N	A	.	L	A	P	V	S	G	Q	A	K	T	A	F	.	F	T	T	G	A	E	A
Query Conservation																																		.	.	.	.																								.													.
Alig confidence											.	.					.	.	.															.	.	.	.																								.													.
Template Conservation											.	.					.	.	.
Template Sequence		C	E	G	L	E	X	I	A	S	.	.	E	N	F	T	.	.	.	L	P	E	V	X	E	V	X	G	S	I	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	F	V	D	E	I	E	T	L	A	I	E	R	C	K	K	L	F	N	C	K	F	A	N	V	Q	P	N	S	G	S	Q	A
Template Known Secondary structure				S					T	T	.	.					.	.	.									T	S	G	G	G	G							T	T			S	S	S																					T		S							S	S
Template Predicted Secondary structure											.	.					.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30			.	.	.	.				.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	N	A	V	K	I	A	R	A	H	T	G	R	P	G	V	I	A	F	S	G	G	F	H	G	R	T	Y	M	T	M	A	L	T	G	K	V	A	P	Y	K	I	G	F	G	P	F	P	G	S	V	Y	H	V	P	Y	P	S	D	L	H	G	I	S	T	Q	D	S	L	D	A	I	E	R	L	F	K	S	D
Query Conservation
Alig confidence										.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation										.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Sequence		N	Q	G	V	Y	A	A	L	.	.	I	N	P	G	D	K	I	L	G	X	D	L	K	X	Y	E	S	C	F	Y	G	V	E	L	D	G	R	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	Y	E	K	V	R	E	I	A	K	K	.
Template Known Secondary structure										.	.	S		T	T											S									T	T	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Predicted Secondary structure										.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template SS confidence
		97	.	.	100	.	.	.	.			.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.																															.	.	.	.	.	.	.	140	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	A	K	Q	V	A	A	I	I	F	E	P	V	Q	G	E	G	G	F	N	V	A	P	K	E	L	V	A	A	I	R	R	L	C	D	E	H	G	I	V	M	I	A	D	E	V	Q	S	G	F	A	R	T	G	K	L	F	A	M	D	H	Y	A	D	K	P	D	L	M	T	M	A	K	S	L	A	G	G	M
Query Conservation
Alig confidence		.	.	.											.	.									.	.	.	.
Template Conservation		.	.	.											.	.									.	.	.	.
Template Sequence		.	.	.	E	K	P	K	L	I	V	C	G	A	.	.	S	A	Y	A	R	V	I	D	.	.	.	.	F	A	K	F	R	E	I	A	D	E	I	G	A	Y	L	F	A	D	I	A	H	I	A	G	L	V	V	A	G	E	H	P	S	P	F	P	Y	A	H	V	V	S	S	T	T	H	K	T	L	R	G	P	R
Template Known Secondary structure		.	.	.				S							.	.	S	S			S				.	.	.	.												T								T	T	T						T	T	S	S				T	T	T		S						S	S	T	T	T		S		S
Template Predicted Secondary structure		.	.	.											.	.									.	.	.	.
Template SS confidence
					160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.					.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	S	G	V	V	G	N	A	N	I	M	D	A	P	A	P	G	G	L	G	G	T	Y	A	G	N	P	L	A	V	A	A	A	H	A	V	L	N	I	I	D	K	E	S	L	C	E	R	A	N	Q	L	G	Q	R	L	K	N	T	L	I	D	A	K	E	S	V	P	A	I	A	A	V	R	G	L	G	S	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	G	I	I	X	T	N	D	E	E	L	A	K	K	I	N	S	A	I	F	P	G	I	Q	G	G	P	L	X	H	V	I	A	A	K	A	V	G	F	K	F	N	L	S	D	E	W	K	V	Y	A	K	Q	V	R	T	N	A	Q	V	L	A	N	V	L	X	D	R	K	F	K	L	V	S	D	G	T	D	N	H
Template Known Secondary structure								S													T	T	T	T		S	S																	T	S																								T	T				G	G	G	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.									.	.	.	.	390	.	.	.	.	.	.	.	.	.	400					.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.																.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.																.	.	.	.
Query Sequence		I	A	V	E	F	N	D	P	Q	T	G	E	P	S	A	A	I	A	Q	K	I	Q	Q	R	A	L	A	Q	G	L	L	L	.	.	.	.	.	.	.	.	L	T	C	G	A	Y	G	N	V	I	R	F	L	Y	P	.	.	.	.	L	T	I	P	D	A	Q	F	D	A	A	M	K	I	L	Q	D	A	L	S	D
Query Conservation																																		.	.	.	.	.	.	.	.																.	.	.	.
Alig confidence														.	.	.	.	.																.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation														.	.	.	.	.
Template Sequence		L	V	L	X	S	F	L	D	R	E	F	S	.	.	.	.	.	G	K	D	A	D	L	A	L	G	N	A	G	I	T	A	N	K	N	T	V	P	G	E	I	R	S	P	F	I	T	S	G	L	R	L	G	T	P	A	L	T	A	R	G	F	K	E	K	E	X	E	I	V	S	N	Y	I	A	D	I	L	D	D
Template Known Secondary structure								T	T	S	S	S		.	.	.	.	.											T	T									T	T			S		T	T	T		S												T	T																			T
Template Predicted Secondary structure														.	.	.	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.						.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions