Job Description Q5H772 Confidence 99.94% Date Thu Jan 5 12:37:18 GMT 2012 Rank 111 Aligned Residues 347 % Identity 11% Template c3mebB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia Resolution 1.90 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.								.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																		.	.																																							.	.	.	.	.	.	.
Query SS confidence																		.	.																																							.	.	.	.	.	.	.
Query Sequence		I	D	F	A	A	G	I	A	V	L	N	T	G	H	R	H	.	.	P	D	L	V	A	A	V	E	Q	Q	L	Q	Q	F	T	H	T	A	Y	Q	I	V	P	Y	E	S	Y	V	T	L	A	E	K	I	N	A	L	A	.	.	.	.	.	.	.	P	V	S	G	Q	A	K	T	A	F	F	T	T	G	A	E	A
Query Conservation																		.	.																																							.	.	.	.	.	.	.
Alig confidence																		.	.																																							.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	N	L	G	V	G	A	Y	R	D	E	S	G	K	P	W	I	L	P	A	V	K	E	A	E	A	I	I	S	S	D	L	S	K	Y	N	K	E	Y	P	P	V	A	G	F	P	L	F	L	E	A	A	Q	F	L	M	F	G	K	D	S	K	A	A	Q	E	G	R	I	A	S	C	Q	S	L	S	G	T	G	S
Template Known Secondary structure					S	S						T	T	S																	S		T	T	T	S			S				T	T																T	T						T	T								S
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	N	A	V	K	I	A	R	A	H	T	G	R	P	G	V	I	A	F	S	G	G	F	H	G	R	T	Y	M	T	M	A	L	T	G	K	V	A	P	Y	K	I	G	F	G	P	F	P	G	S	V	Y	H	V	P	Y	P	S	D	L	H	G	I	S	T	Q	D	S	L	D	A	I	E	R	L	F	K	S	D
Query Conservation
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template Sequence		L	H	I	G	F	E	F	L	H	L	W	M	P	K	A	E	F	Y	M	P	S	T	T	W	P	N	H	Y	G	I	Y	D	K	V	.	.	.	.	.	.	.	.	.	.	.	.	F	N	K	L	K	V	P	Y	K	E	Y	T	Y	L	R	K	D	G	E	L	E	I	D	F	S	N	T	K	K	D	I	Q	S	.
Template Known Secondary structure														T	T							S	S			T										.	.	.	.	.	.	.	.	.	.	.	.			T	T	T	S								B		T	T	S		S	S	B												.
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.																																		.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.													.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.								250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.
Query Sequence		I	E	A	K	Q	V	A	A	I	I	F	E	P	V	Q	G	E	G	G	F	N	V	A	P	K	E	L	V	A	A	I	R	R	L	C	D	E	H	G	I	V	M	I	A	D	E	V	Q	S	G	F	A	R	T	G	K	.	.	.	.	.	.	.	L	F	A	M	D	H	Y	A	D	K	P	D	L	M	T	M	A
Query Conservation																																																										.	.	.	.	.	.	.
Alig confidence		.	.																																																							.	.	.	.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	A	P	E	K	S	I	F	L	F	H	A	C	A	H	N	P	S	G	I	D	F	T	E	A	Q	W	K	E	L	L	P	I	M	K	E	K	K	H	I	A	F	F	D	S	A	Y	Q	G	F	A	T	G	S	F	E	A	D	A	F	A	V	R	M	F	V	D	A	G	V	E	V	L	V	A	Q	S	F	S
Template Known Secondary structure		.	.	S		T	T							S	S	S		T	T	T																				T								S		T	T	T	S	S	S						T										T										T
Template Predicted Secondary structure		.	.
Template SS confidence
				178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		267	.	.	270		.	.	.	.	.	.	.	.	.	280																.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.					.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure						.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.
Query SS confidence						.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.
Query Sequence		K	S	L	A	.	G	G	M	P	L	S	G	V	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	N	I	M	D	A	P	A	P	G	G	L	G	G	T	Y	A	G	N	P	L	A	V	A	A	A	H	A	V	L	N	I	I	D	K	.	.	.	.	E	S	L	C	E	R	A	N	Q	L
Query Conservation						.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.
Alig confidence						.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.
Template Conservation
Template Sequence		K	N	F	G	L	Y	G	E	R	I	G	C	L	H	V	V	H	A	G	V	E	G	S	V	E	K	N	K	A	L	S	A	A	M	V	S	G	M	T	L	Q	I	R	K	T	W	S	M	S	A	I	H	G	A	Y	I	V	Q	V	I	V	H	D	K	R	L	L	Q	M	F	Y	D	N	V	K	E	M	S	A	R
Template Known Secondary structure		T	T	S			G	G	G											S		S	S	S																					T	T	T	S	S														T	S
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		327	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.										.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.
Query Sequence		G	Q	R	L	K	N	T	L	I	D	A	K	E	S	V	P	A	I	.	.	.	.	.	.	.	.	.	A	A	V	R	G	L	G	S	M	I	A	V	E	F	N	D	P	Q	T	G	E	P	S	A	A	I	A	Q	K	I	Q	Q	R	A	L	A	Q	G	L	L	L	L	T	C	G	A	Y	G	N	V	I	R	F
Query Conservation																				.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template Sequence		I	H	R	M	R	S	L	L	H	A	S	L	A	K	R	K	T	P	G	P	G	S	K	G	T	W	D	H	I	L	T	A	I	G	M	F	T	F	T	G	L	T	.	.	.	.	.	.	.	.	.	.	.	P	E	H	V	D	Y	L	K	E	K	W	S	I	Y	L	V	K	A	G	.	.	.	.	.	G	R	M
Template Known Secondary structure																T	T				S	T	T	T	T			T							S	S								.	.	.	.	.	.	.	.	.	.	.																B	T	G	G	.	.	.	.	.	G
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.												.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.						.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Y	P	L	T	I	P	D	A	Q	F	D	A	A	M	K	I	L	Q	D	A	L	S	D
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		S	M	C	.	G	L	T	E	S	N	C	D	Y	V	A	E	A	I	H	D	A	V	T	K
Template Known Secondary structure			G	G	.	G			T	T	T
Template Predicted Secondary structure					.
Template SS confidence
		400	.	.		.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions