Job Description Q5H772 Confidence 99.93% Date Thu Jan 5 12:37:18 GMT 2012 Rank 121 Aligned Residues 343 % Identity 16% Template c3mafB_ PDB info PDB header:lyase Chain: B: PDB Molecule:sphingosine-1-phosphate lyase; PDBTitle: crystal structure of stspl (asymmetric form) Resolution 2.97 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.							.	.	.	.	.	110	.	.
Predicted Secondary structure																																		.																							.											.	.	.	.	.	.
Query SS confidence																																		.																							.											.	.	.	.	.	.
Query Sequence		E	Y	I	D	F	A	A	G	I	A	V	L	N	T	G	H	R	H	P	D	L	V	A	A	V	E	Q	Q	L	Q	Q	F	.	T	H	T	A	Y	Q	I	V	P	Y	E	S	Y	V	T	L	A	E	K	I	N	A	.	L	A	P	V	S	G	Q	A	K	T	.	.	.	.	.	.	A	F	F	T	T	G	A	E
Query Conservation																																		.																							.											.	.	.	.	.	.
Alig confidence																.	.																	.																							.											.	.	.	.	.	.
Template Conservation																.	.
Template Sequence		E	I	L	A	E	I	A	A	M	G	A	G	A	V	.	.	Y	D	E	H	H	I	A	F	L	N	E	V	Y	A	L	Q	S	Q	S	N	P	L	H	P	D	L	W	P	S	T	A	K	F	E	A	E	V	V	A	M	T	A	H	M	L	G	G	D	A	A	G	G	T	V	C	G	T	V	T	S	G	G	T	E
Template Known Secondary structure																.	.																	T	T			T	T		T	T	T																			T	T	T	T	T	T	T	S								S	S
Template Predicted Secondary structure																.	.
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.						.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.
Query SS confidence												.	.	.	.	.
Query Sequence		A	V	E	N	A	V	K	I	A	R	.	.	.	.	.	A	H	T	G	R	P	G	V	I	A	F	S	G	G	F	H	G	R	T	Y	M	T	M	A	L	T	G	K	V	A	P	Y	K	I	G	F	G	P	F	P	G	S	V	Y	H	V	P	Y	P	S	D	L	H	G	I	S	T	Q	D	S	L	D	A	I	E
Query Conservation												.	.	.	.	.
Alig confidence												.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Template Sequence		S	L	L	L	A	M	K	T	Y	R	D	W	A	R	A	T	K	G	I	T	A	P	E	A	V	V	P	V	S	A	H	A	A	F	D	K	A	A	Q	Y	F	G	I	K	L	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	L	D	A	D	Y	R	A	.	.	.	.	.	D	V	A	A	M	R
Template Known Secondary structure																					S	S							T	T	S		T										T						.	.	.	.	.	.	.	.	.	.	.	.	.			B		T	T	S	S	B	.	.	.	.	.
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.	.
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.														.	.	220	.	.	.	.	.	.						.	.	.	230	.	.
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.									.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.
Query Sequence		R	L	F	K	S	D	I	E	A	K	Q	V	A	A	I	I	F	E	P	V	Q	G	E	G	G	F	N	V	A	P	K	E	L	V	A	A	I	R	R	L	C	D	E	H	G	I	V	M	I	A	D	E	V	Q	S	G	F	.	.	.	.	.	.	.	.	A	R	T	G	K	L	F	A	M	D	H	Y	A	D	K
Query Conservation																																																											.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.																						.	.	.	.																									.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.																						.	.	.	.
Template Sequence		E	A	I	.	.	.	.	.	T	P	N	T	V	V	V	A	G	S	A	P	G	Y	P	H	G	V	V	D	P	.	.	.	.	I	P	E	I	A	A	L	A	A	E	H	G	I	G	C	H	V	D	A	C	L	G	G	F	I	L	P	W	A	E	R	L	G	Y	P	V	P	P	F	D	F	R	L	E	G	V	T
Template Known Secondary structure					.	.	.	.	.		T	T								T	T		T	T	T						.	.	.	.												T								T	T	T	T	T	T						T	T	T							S	T	T	S	T	T
Template Predicted Secondary structure					.	.	.	.	.																						.	.	.	.
Template SS confidence
		233	.	.						.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.					.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300											.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.
Query Sequence		P	D	L	M	T	M	A	K	S	L	A	G	G	M	P	L	S	G	V	V	G	N	A	N	I	M	D	A	P	A	P	G	G	L	G	G	T	Y	A	G	N	.	.	.	.	.	.	.	.	.	.	P	L	A	V	A	A	A	H	A	V	L	N	I	I	D	K	E	S	L	C	E	R	A	N	Q	L	G	Q	R
Query Conservation																																											.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	V	S	A	D	T	H	K	Y	G	Y	G	A	K	G	T	S	V	I	L	Y	R	R	P	D	L	L	H	Y	Q	Y	F	I	A	A	D	W	P	G	G	L	Y	F	S	P	T	F	A	G	S	R	P	G	A	L	S	A	T	A	W	A	A	M	L	S	L	G	E	E	G	Y	L	D	A	T	R	R	I	L	Q
Template Known Secondary structure							T	T	T	T	T				S	S							S	S												S	S		T	T						S	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.		.	400	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		L	K	N	T	L	I	D	A	K	E	S	V	P	A	I	A	A	V	R	G	L	G	S	M	I	A	V	E	F	N	D	P	Q	T	G	E	P	S	A	A	I	A	Q	K	I	Q	Q	R	A	L	A	Q	G	L	L	L	L	T	C	G	A	Y	G	N	V	I	R	F	L	.	Y	P	L	T	I	P	D	A	Q	F
Query Conservation																																																																							.
Alig confidence																																			.	.	.	.	.	.	.	.																.													.
Template Conservation																																			.	.	.	.	.	.	.	.																.
Template Sequence		A	A	D	R	L	K	A	G	V	R	A	I	P	S	L	K	I	L	G	D	P	L	W	V	I	A	V	A	S	D	E	L	N	.	.	.	.	.	.	.	.	I	Y	Q	V	M	E	E	M	A	G	R	G	W	R	L	.	N	G	L	H	R	P	P	A	F	H	V	A	L	T	L	R	H	T	E	P	G	V	V
Template Known Secondary structure												T	S	T	T				S	S			S	S							S	S	S		.	.	.	.	.	.	.	.											T	T				.				T	T	T	T								G	G	G	S	S	T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.																.
Template SS confidence
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.									.	.	.	420	.	.	.	.	.	.	.	.	.	430	.		.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
		409	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	A	M	K	I	L	Q	D	A	L	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	R	F	L	A	D	L	Q	D	A	V	A	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		455	.	.	.	.	460	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions