Job Description Q5H772 Confidence 100.00% Date Thu Jan 5 12:37:18 GMT 2012 Rank 42 Aligned Residues 362 % Identity 16% Template c3hqtB_ PDB info PDB header:transferase Chain: B: PDB Molecule:cai-1 autoinducer synthase; PDBTitle: plp-dependent acyl-coa transferase cqsa Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																														.	.	.	.
Query SS confidence																																																																														.	.	.	.
Query Sequence		N	N	E	F	H	Q	R	R	L	S	A	T	P	R	G	V	G	V	M	C	N	F	F	A	Q	S	A	E	N	A	T	L	K	D	V	E	G	N	E	Y	I	D	F	A	A	G	I	A	V	L	N	T	G	H	R	H	P	D	L	V	A	A	V	E	Q	Q	L	Q	Q	F	T	H	T	A	Y	Q	.	.	.	.
Query Conservation																																																																														.	.	.	.
Alig confidence														.																																.	.	.	.	.	.	.	.	.	.																							.	.	.	.
Template Conservation														.																																.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	N	K	I	D	H	Y	I	E	N	Y	F	.	D	I	N	K	N	G	K	H	L	V	L	G	K	Q	A	S	P	D	D	I	I	L	Q	S	N	D	Y	L	A	L	A	.	.	.	.	.	.	.	.	.	.	N	H	P	L	I	K	A	R	L	A	K	S	L	L	E	E	Q	Q	S	L	F	M	S	A	S	F
Template Known Secondary structure													T	.	T	T	S	T	T	S	S		T	T			S				T	T	S								T	T			T	.	.	.	.	.	.	.	.	.	.	T														S							S	B	G	G	G
Template Predicted Secondary structure														.																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		11	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.											.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	P	Y	E	S	Y	V	T	L	A	E	K	I	N	A	L	A	P	V	S	G	Q	A	K	T	A	F	F	T	T	G	A	E	A	V	E	N	A	V	K	I	A	R	A	H	T	G	R	P	G	V	I	A	F	S	G	G	F	H	G	R	T	Y	M	T	M	A	L	T	G	K	V	A	P	Y	K	I	G	F
Query Conservation
Alig confidence																				.	.	.																				.	.	.																																		.	.	.	.
Template Conservation																				.	.	.																				.	.	.																																		.	.	.	.
Template Sequence		L	Q	N	D	Y	D	K	P	M	I	E	K	R	L	A	K	F	T	.	.	.	G	F	D	E	C	L	L	S	Q	S	G	W	N	A	N	V	G	L	L	.	.	.	Q	T	I	C	Q	P	N	T	N	V	Y	I	D	F	F	A	H	M	S	L	W	E	G	A	R	Y	A	N	A	Q	A	H	P	.	.	.	.
Template Known Secondary structure		G		S	T	T	T	S												.	.	.	T		S						S											.	.	.						T	T							T	T	S											T	T						.	.	.	.
Template Predicted Secondary structure																				.	.	.																				.	.	.																																		.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	F	P	G	S	V	Y	H	V	P	Y	P	S	D	L	H	G	I	S	T	Q	D	S	L	D	A	I	E	R	L	F	K	S	D	I	E	A	K	Q	V	A	A	I	I	F	E	P	V	Q	G	E	G	G	F	N	V	A	P	K	E	L	V	A	A	I	R	R	L	C	D	E	H	G	I	V	M	I	A	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.																					.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.																					.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	M	H	N	N	C	D	H	L	R	M	L	I	Q	R	.	.	.	.	H	G	P	G	I	I	V	V	D	S	I	Y	S	T	L	G	T	I	A	P	.	.	.	.	L	A	E	L	V	N	I	S	K	E	F	G	C	A	L	L	V	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T												.	.	.	.			S							S	B		T	T	T			B			.	.	.	.											T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.																					.	.	.	.
Template SS confidence
																					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.					.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.					.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		239	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.		.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure						.																															.
Query SS confidence						.																															.
Query Sequence		E	V	Q	S	.	G	F	A	R	T	G	K	L	F	A	M	D	H	Y	A	D	K	P	D	L	M	T	M	A	K	S	L	A	G	G	.	M	P	L	S	G	V	V	G	N	A	N	I	M	D	A	P	A	P	G	G	L	G	G	T	Y	A	G	N	P	L	A	V	A	A	A	H	A	V	L	N	I	I	D	K
Query Conservation						.																															.
Alig confidence						.																															.
Template Conservation
Template Sequence		E	S	H	S	L	G	T	H	G	P	N	G	A	G	L	L	A	E	L	G	L	T	R	E	V	H	F	M	T	A	S	L	A	K	T	F	A	Y	R	A	G	A	I	W	C	N	N	E	V	N	R	C	V	P	F	I	S	Y	P	A	I	F	S	S	T	L	L	P	Y	E	A	A	G	L	E	T	T	L	E	I
Template Known Secondary structure			T	T	T	B	T	T	B	S	G	G	G							T	T		G	G	G		S						S	S	S	T	T		S	S							S	S	S	G	G	G	T											S	B
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390						.
Predicted Secondary structure																																																																												.	.	.	.	.
Query SS confidence																																																																												.	.	.	.	.
Query Sequence		E	S	L	C	E	R	A	N	Q	L	G	Q	R	L	K	N	T	L	I	D	A	K	E	S	V	P	A	I	A	A	V	R	G	L	G	S	M	I	A	V	E	F	N	D	P	Q	T	G	E	P	S	A	A	I	A	Q	K	I	Q	Q	R	A	L	A	Q	G	L	L	L	L	T	C	G	A	.	.	.	.	.	Y
Query Conservation																																																																												.	.	.	.	.
Alig confidence																													.	.														.	.	.	.	.	.	.																										.	.	.	.	.
Template Conservation																													.	.														.	.	.	.	.	.	.
Template Sequence		I	E	S	A	D	N	R	R	Q	H	L	D	R	M	A	R	K	L	R	I	G	L	S	Q	L	G	L	.	.	T	I	R	S	E	S	Q	I	I	G	L	E	T	.	.	.	.	.	.	.	G	D	E	R	N	T	E	K	V	R	D	Y	L	E	S	N	G	V	F	G	S	V	F	C	R	P	A	T	S	K	N
Template Known Secondary structure					T																					T	T		.	.						S	S							.	.	.	.	.	.	.		S														T	T								T	T	S	S		T	T
Template Predicted Secondary structure																													.	.														.	.	.	.	.	.	.
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.			310	.	.	.	.	.	.	.	.	.	320	.	.								.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	V	I	R	F	L	Y	P	L	T	I	P	D	A	Q	F	D	A	A	M	K	I	L	Q	D	A	L	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	I	I	R	L	S	L	N	S	D	V	N	D	E	Q	I	A	K	I	I	E	V	C	S	D	A	V	N	Y
Template Known Secondary structure											T	T
Template Predicted Secondary structure
Template SS confidence
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions