Job Description Q5H772 Confidence 99.95% Date Thu Jan 5 12:37:18 GMT 2012 Rank 88 Aligned Residues 353 % Identity 12% Template c3eibB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana Resolution 1.85 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.				100	.	.	.	.	.	.	.	.	.	110	.
Predicted Secondary structure																																							.	.																											.	.	.
Query SS confidence																																							.	.																											.	.	.
Query Sequence		V	E	G	N	E	Y	I	D	F	A	A	G	I	A	V	L	N	T	G	H	R	H	P	D	L	V	A	A	V	E	Q	Q	L	Q	Q	F	T	.	.	H	T	A	Y	Q	I	V	P	Y	E	S	Y	V	T	L	A	E	K	I	N	A	L	A	P	V	S	.	.	.	G	Q	A	K	T	A	F	F	T	T	G	A
Query Conservation																																							.	.																											.	.	.
Alig confidence																				.	.	.																	.	.																											.	.	.
Template Conservation																				.	.	.
Template Sequence		Y	P	D	A	Q	V	I	S	L	G	I	G	D	T	T	E	P	I	.	.	.	P	E	V	I	T	S	A	M	A	K	K	A	H	E	L	S	T	I	E	G	Y	S	G	Y	G	A	E	Q	G	A	K	P	L	R	A	A	I	A	K	T	F	Y	G	G	L	G	I	G	D	D	D	V	F	V	S	D	G	A	K
Template Known Secondary structure		S	T	T							S	S					S			.	.	.															T	T	S	T	T	T				S			T	T															T	T	T	T			G	G	G					S
Template Predicted Secondary structure																				.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	V	E	N	A	V	K	I	A	R	A	H	T	G	R	P	G	V	I	A	F	S	G	G	F	H	G	R	T	Y	M	T	M	A	L	T	G	K	V	A	P	Y	K	I	G	F	G	P	F	P	G	S	V	Y	H	V	P	Y	P	S	D	L	H	G	I	S	T	Q	D	S	L	D	A	I	E	R	L	F	K
Query Conservation
Alig confidence												.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	D	I	S	R	L	Q	V	M	F	.	.	.	.	G	S	N	V	T	I	A	V	Q	D	P	S	Y	P	A	Y	V	D	S	S	V	I	M	G	Q	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	F	N	T	D	V	Q	K	Y	G	N	I	E	Y	M	R	C	T	P	E	N	G	F	F
Template Known Secondary structure												.	.	.	.		T	T								S			T									T	T		S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T	T			T	T								T	T	T	T	T
Template Predicted Secondary structure												.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		130	.	.	.	.	.	.	.	.	.					140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.																.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.					.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.
Query SS confidence																																																																			.	.	.	.
Query Sequence		S	D	I	E	A	K	Q	V	A	A	I	I	F	E	P	V	Q	G	E	G	G	F	N	V	A	P	K	E	L	V	A	A	I	R	R	L	C	D	E	H	G	I	V	M	I	A	D	E	V	Q	S	G	F	A	R	T	G	K	L	F	A	M	D	H	Y	.	.	.	.	A	D	K	P	D	L	M	T	M	A	K
Query Conservation																																																																			.	.	.	.
Alig confidence																																																																			.	.	.	.
Template Conservation
Template Sequence		P	D	L	S	T	V	G	R	T	D	I	I	F	F	C	S	P	N	N	P	T	G	A	A	A	T	R	E	Q	L	T	Q	L	V	E	F	A	K	K	N	G	S	I	I	V	Y	D	S	A	Y	A	M	Y	M	S	D	D	N	P	R	S	I	F	E	I	P	G	A	E	E	V	A	M	E	T	A	S	F	S	N
Template Known Secondary structure				G	G	G					S						S	S		T	T	T																				T								T	T	G	G	G			S	S			S	S	G	G	G	S	T	T	G	G	G	T							S
Template Predicted Secondary structure
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		268	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.									.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure					.																		.	.	.	.	.	.	.	.
Query SS confidence					.																		.	.	.	.	.	.	.	.
Query Sequence		S	L	A	.	G	G	M	P	L	S	G	V	V	G	N	A	N	I	M	D	A	.	.	.	.	.	.	.	.	P	A	P	G	G	L	G	G	T	Y	A	G	N	P	L	A	V	A	A	A	H	A	V	L	N	I	I	D	K	E	S	L	C	E	R	A	N	Q	L	G	Q	R	L	K	N	T	L	I	D	A	K
Query Conservation					.																		.	.	.	.	.	.	.	.
Alig confidence					.																		.	.	.	.	.	.	.	.																											.
Template Conservation																																																									.
Template Sequence		Y	A	G	F	T	G	V	R	L	G	W	T	V	I	P	K	K	L	L	Y	S	D	G	F	P	V	A	K	D	F	N	R	I	I	C	T	C	F	N	G	A	S	N	I	S	Q	A	G	A	L	A	C	L	T	P	.	E	G	L	E	A	M	H	K	V	I	G	F	Y	K	E	N	T	N	I	I	I	D	T	F
Template Known Secondary structure				S	T	T	T	T									T	T		B		T	T	S		B																S												S	S		.
Template Predicted Secondary structure																																																									.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.					.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.
Query SS confidence																																																							.	.	.	.
Query Sequence		E	S	V	P	A	I	A	A	V	R	G	L	G	S	M	I	A	V	E	F	N	D	P	Q	T	G	E	P	S	A	A	I	A	Q	K	I	Q	Q	R	A	L	A	Q	G	L	L	L	L	T	C	G	A	Y	.	.	.	.	G	N	V	I	R	F	L	Y	P	L	T	I	P	D	A	Q	F	D	A	A	M	K	I
Query Conservation																																																							.	.	.	.
Alig confidence																											.	.	.	.	.	.	.																						.	.	.	.							.	.
Template Conservation																											.	.	.	.	.	.	.																																.	.
Template Sequence		T	S	L	G	Y	D	V	Y	G	G	K	N	A	P	Y	V	W	V	H	F	P	N	Q	S	S	.	.	.	.	.	.	.	W	D	V	F	A	E	I	L	E	K	T	H	V	V	T	T	P	G	S	G	F	G	P	G	G	E	G	F	V	R	V	.	.	S	A	F	G	H	R	E	N	I	L	E	A	C	R	R
Template Known Secondary structure				T	T							S	S	S	S							T	T	S			.	.	.	.	.	.	.																		G	G	G	G		G	G	G	T	T					.	.				S
Template Predicted Secondary structure																											.	.	.	.	.	.	.																																.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.								.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.			.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		415	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	Q	D	A	L	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	K	Q	L	Y	K	H
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		421	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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