Job Description Q5H772 Confidence 99.96% Date Thu Jan 5 12:37:18 GMT 2012 Rank 78 Aligned Residues 367 % Identity 14% Template c3dzzB_ PDB info PDB header:transferase Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase; PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution Resolution 1.61 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		C	N	F	F	A	Q	S	A	E	N	A	T	L	K	D	V	E	G	N	E	Y	I	D	F	A	A	G	I	A	V	L	N	T	G	H	R	H	P	D	L	V	A	A	V	E	Q	Q	L	Q	Q	F	T	H	T	A	Y	Q	I	V	P	Y	E	S	Y	V	T	L	A	E	K	I	N	A	L	A	P	V	S	.	G
Query Conservation																																																																																.
Alig confidence																													.	.							.																									.																		.
Template Conservation																													.	.							.																									.
Template Sequence		F	T	H	V	P	K	R	Q	G	N	S	I	K	W	G	V	L	K	E	K	E	L	P	X	W	I	A	.	.	E	X	D	F	K	I	.	A	P	E	I	X	A	S	X	E	E	K	L	K	V	A	A	F	G	Y	E	S	V	P	A	.	E	Y	Y	K	A	V	A	D	W	E	E	I	E	H	R	A	R	P	K
Template Known Secondary structure			S	S						T	T		T	T	T	T	T			T	T						S	S	.	.			S	S			.													T	T											.															S
Template Predicted Secondary structure																													.	.							.																									.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	K	T	A	F	F	T	T	G	A	E	A	V	E	N	A	V	K	I	A	R	A	H	T	G	R	P	G	V	I	A	F	S	G	G	F	H	G	R	T	Y	M	T	M	A	L	T	G	K	V	A	P	Y	K	I	G	F	G	P	F	P	G	S	V	Y	H	V	P	Y	P	S	D	L	H	G	I	S	T	Q
Query Conservation
Alig confidence																							.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	D	W	C	V	F	A	S	G	V	V	P	A	I	S	A	X	V	R	Q	F	.	.	.	T	S	P	G	D	Q	I	L	V	Q	E	P	V	Y	N	X	F	Y	S	V	I	E	G	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	R	V	I	S	S	D	L	I	Y	E	N	S	K	Y	S
Template Known Secondary structure		G	G	G					S														.	.	.	S		T	T							S	S			T								T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T
Template Predicted Secondary structure																							.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.				.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.																130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		D	S	L	D	A	I	E	R	L	F	K	S	D	I	E	A	K	Q	V	A	A	I	I	F	E	P	V	Q	G	E	G	G	F	N	V	A	P	K	E	L	V	A	A	I	R	R	L	C	D	E	H	G	I	V	M	I	A	D	E	V	Q	S	G	F	A	R	T	G	K	L	F	A	M	D	H	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence														.	.	.	.												.																																																.	.	.	.	.
Template Conservation														.	.	.	.												.
Template Sequence		V	N	W	A	D	L	E	E	K	L	A	T	.	.	.	.	P	S	V	R	X	X	V	F	C	N	P	.	H	N	P	I	G	Y	A	W	S	E	E	E	V	K	R	I	A	E	L	C	A	K	H	Q	V	L	L	I	S	D	E	I	H	G	D	L	V	L	T	D	E	D	I	T	P	A	F	T	V	D	W	D
Template Known Secondary structure												T	S	.	.	.	.	T	T								S	S	.	B	T	T	T	T	B																	T	T								T	T	G	G	G	B		S	S						G	G	G	S		T	T
Template Predicted Secondary structure														.	.	.	.												.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.					.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		Y	A	D	K	P	D	L	M	T	M	A	K	S	L	A	.	G	G	M	P	L	S	G	V	V	G	N	A	N	I	M	D	A	P	A	P	G	G	L	G	G	T	Y	A	G	N	P	L	A	V	A	A	A	H	A	V	L	N	I	I	D	K	E	S	L	C	E	R	A	N	Q	L	G	Q	R	L	K	N	T	L
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		A	K	N	W	V	V	S	L	I	S	P	S	T	F	N	L	A	A	L	H	A	A	C	A	I	I	P	N	P	D	L	R	A	R	A	E	E	S	F	F	L	A	G	I	G	E	P	N	L	L	A	I	P	A	A	I	A	A	Y	E	E	G	H	D	W	L	R	E	L	K	Q	V	L	R	D	N	F	A	Y	A
Template Known Secondary structure		G	G	G	G											S		G	G	G									S															T		S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		335	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.	.			.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.																																									.													.	.
Query SS confidence									.	.																																									.													.	.
Query Sequence		I	D	A	K	E	S	V	.	.	P	A	I	A	A	V	R	G	L	G	S	M	I	A	V	E	F	N	D	P	Q	T	G	E	P	S	A	A	I	A	Q	K	I	Q	Q	R	A	L	A	Q	.	G	L	L	L	L	T	C	G	A	Y	G	N	.	.	V	I	R	F	L	Y	P	L	T	I	P	D	A	Q	F	D
Query Conservation									.	.																																									.													.	.
Alig confidence									.	.																								.	.	.	.	.	.												.													.	.
Template Conservation																																		.	.	.	.	.	.
Template Sequence		R	E	F	L	A	K	E	V	P	E	V	K	V	L	D	S	N	A	S	Y	L	A	W	V	D	I	S	A	L	G	X	N	.	.	.	.	.	.	A	E	D	F	C	K	Y	L	R	E	K	T	G	L	I	I	S	A	G	N	G	Y	R	G	N	G	H	E	F	V	R	I	N	L	A	C	P	K	E	L	V	I
Template Known Secondary structure										T	T	S						S	B	S	S							G	G	G		S		.	.	.	.	.	.																			G	G	G	G		T	T	G	G	G								S
Template Predicted Secondary structure																																		.	.	.	.	.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.							.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	M	K	I	L	Q	D	A	L	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	G	X	Q	R	L	K	Q	G	V	L	N
Template Known Secondary structure													T
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions