Job Description Q5H772 Confidence 99.90% Date Thu Jan 5 12:37:18 GMT 2012 Rank 151 Aligned Residues 339 % Identity 14% Template c3caiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein Resolution 1.80 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80						.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																																													.	.	.	.	.
Query SS confidence																																													.	.	.	.	.
Query Sequence		E	G	N	E	Y	I	D	F	A	A	G	I	A	V	L	N	T	G	H	R	H	P	D	L	V	A	A	V	E	Q	Q	L	Q	Q	F	T	H	T	A	Y	Q	I	V	.	.	.	.	.	P	Y	E	S	Y	V	T	L	A	E	K	I	N	A	L	A	P	V	S	G	Q	A	K	T	A	F	F	T	T	G	A	E
Query Conservation																																													.	.	.	.	.
Alig confidence												.	.	.	.	.	.																												.	.	.	.	.																			.
Template Conservation												.	.	.	.	.	.																																																			.
Template Sequence		D	G	W	V	H	F	D	A	P	A	.	.	.	.	.	.	G	M	L	I	P	D	S	V	A	T	T	V	S	T	A	F	R	R	S	G	A	S	T	V	G	A	H	P	S	A	R	R	S	A	A	V	L	D	A	A	R	E	A	V	A	D	L	V	N	A	.	D	P	G	G	V	V	L	G	A	D	R	A	V
Template Known Secondary structure		S	S					B	G	G	G	.	.	.	.	.	.																					S	S	S		S	S	S																						T		.		G	G	G					S
Template Predicted Secondary structure												.	.	.	.	.	.																																																			.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.							.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	E	N	A	V	K	I	A	R	A	H	T	G	R	P	G	V	I	A	F	S	G	G	F	H	G	R	T	Y	M	T	M	A	L	T	G	K	V	A	P	Y	K	I	G	F	G	P	F	P	G	S	V	Y	H	V	P	Y	P	S	D	L	H	G	I	S	T	Q	D	S	L	D	A	I	E	R	L	F	K	S
Query Conservation
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Sequence		L	L	S	L	L	A	E	A	S	S	S	R	A	G	L	G	Y	E	V	I	V	S	R	L	D	D	E	A	N	I	A	P	W	L	R	A	A	H	R	Y	G	A	K	V	K	W	A	E	V	D	I	E	T	G	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	P	T	W	Q	W	E	S	L	I	.	.
Template Known Secondary structure										T	G	G	G	G	B	T	T							T	T	S		G	G	G	T											B										T	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G						.	.
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.														.	.	.	.	150	.	.	.	.
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	I	E	A	K	Q	V	A	A	I	I	F	E	P	V	Q	G	E	G	G	F	N	V	A	P	K	E	L	V	A	A	I	R	R	L	C	D	E	H	G	I	V	M	I	A	D	E	V	Q	S	G	F	A	R	T	G	K	L	F	A	M	D	H	Y	A	D	K	P	D	L	M	T	M	A	K	S	L	A	G	G
Query Conservation
Alig confidence		.	.	.																						.	.	.	.																												.	.	.
Template Conservation		.	.	.																						.	.	.	.																												.	.	.
Template Sequence		.	.	.	S	K	S	T	R	L	V	A	V	N	S	A	S	G	T	L	G	G	V	T	D	.	.	.	.	L	R	A	M	T	K	L	V	H	D	V	G	A	L	V	V	V	D	H	S	A	A	A	P	Y	R	L	.	.	.	L	D	I	R	E	T	D	A	D	V	V	T	V	N	A	H	A	W	G	G	P	P
Template Known Secondary structure		.	.	.		T	T								S	B		T	T	T		B	B			.	.	.	.											T	T								T	T	T	T	T	T			.	.	.									S						G	G	G	G	T	S		S
Template Predicted Secondary structure		.	.	.																						.	.	.	.																												.	.	.
Template SS confidence
					155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.					.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.				.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.										.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.														.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	P	L	S	G	V	V	G	N	A	N	I	M	D	A	P	A	P	G	.	.	.	.	.	.	.	.	.	G	L	G	G	T	Y	A	G	N	P	L	A	V	A	A	A	H	A	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	I	D	K	E	S	L	C	E	R	A	N	Q	L	G	Q	R	L
Query Conservation																					.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.
Template Sequence		I	G	.	A	M	V	F	R	D	P	S	V	M	N	S	F	G	S	V	S	T	N	P	Y	A	T	G	P	A	R	L	E	I	G	V	H	Q	F	G	L	L	A	G	V	V	A	S	I	E	Y	L	A	A	L	D	E	S	A	R	G	S	R	R	E	R	L	A	V	S	M	Q	S	A	D	A	Y	L	N	R	V
Template Known Secondary structure				.					S							T	S					S		T	T			G	G	G	G	G			S																			T	S	S	T	T			S	S
Template Predicted Secondary structure				.
Template SS confidence
		225	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.				.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.												.	.	.	.	.
Predicted Secondary structure															.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	N	T	L	I	D	A	K	E	S	V	P	A	.	.	.	I	A	A	V	R	G	L	G	S	M	I	A	V	E	F	N	D	P	Q	T	G	E	P	S	A	A	I	A	Q	K	I	Q	Q	R	A	L	A	Q	G	L	L	L	L	T	C	G	A	Y	.	.	.	.	.	.	.	.	.	.	.	G	N	V	I	R
Query Conservation															.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.																				.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.
Template Sequence		F	D	Y	L	M	V	S	L	R	S	L	P	L	V	M	L	I	G	R	P	E	A	Q	I	P	V	V	S	F	A	V	H	K	V	P	.	.	.	.	.	.	.	.	A	D	R	V	V	Q	R	L	A	D	N	G	I	L	A	I	A	N	T	G	S	R	V	L	D	V	L	G	V	N	D	V	G	G	A	V	T
Template Known Secondary structure											T		T	T								S	S	B		S							T	T	B		.	.	.	.	.	.	.	.											T	T								S								T	T	T	T	T	T
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.									.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	L	Y	P	L	T	I	P	D	A	Q	F	D	A	A	M	K	I	L	Q	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	L	A	H	Y	S	T	M	A	E	V	D	Q	L	V	R	A	L	A	S
Template Known Secondary structure						T	T															T
Template Predicted Secondary structure
Template SS confidence
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions