Job Description Q5H772 Confidence 99.77% Date Thu Jan 5 12:37:18 GMT 2012 Rank 213 Aligned Residues 310 % Identity 12% Template c3bwnF_ PDB info PDB header:transferase Chain: F: PDB Molecule:l-tryptophan aminotransferase; PDBTitle: l-tryptophan aminotransferase Resolution 2.25 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60							.	.	.	.	.	.	.	.	.						70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.						.	.	.	100	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.										.	.	.	.	.																												.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.										.	.	.	.	.																												.	.	.	.	.
Query Sequence		Y	I	D	F	A	A	G	I	A	V	L	N	T	G	H	R	H	P	D	.	.	.	.	.	.	L	V	A	A	V	E	Q	Q	L	.	.	.	.	.	Q	Q	F	T	H	T	A	Y	Q	I	V	P	Y	E	S	Y	V	T	L	A	E	K	I	N	A	L	A	.	.	.	.	.	P	V	S	G	Q	A	K	T	A
Query Conservation																					.	.	.	.	.	.										.	.	.	.	.																												.	.	.	.	.
Alig confidence						.	.	.	.	.											.	.	.	.	.	.										.	.	.	.	.																												.	.	.	.	.
Template Conservation						.	.	.	.	.
Template Sequence		M	S	D	F	.	.	.	.	.	V	V	N	L	D	H	G	D	P	T	A	Y	E	E	Y	W	R	K	M	G	D	R	C	T	V	T	I	R	G	C	D	L	M	S	Y	F	S	D	M	T	N	L	C	W	F	L	E	P	E	L	E	D	A	I	K	D	L	H	G	V	V	G	N	A	A	T	E	D	R	Y	I
Template Known Secondary structure					S	.	.	.	.	.					S	S				G	G	G								G	G	G	G						T	T	T	T		S	S		S		T	T	S	S	S	T	T	S																	S	B			T	T	S
Template Predicted Secondary structure						.	.	.	.	.
Template SS confidence
		20	.	.	.						.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.				.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		F	F	T	T	G	A	E	A	V	E	N	A	V	K	I	A	R	A	H	T	G	R	P	.	.	.	G	V	I	A	F	S	G	G	F	H	G	R	T	Y	M	T	M	A	L	T	G	K	V	A	P	Y	K	I	G	F	G	P	F	P	G	S	V	Y	H	V	P	Y	P	S	D	L	H	G	I	S	T	Q	D	S
Query Conservation																									.	.	.
Alig confidence																									.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	G	T	G	S	T	Q	L	C	Q	A	A	V	H	A	L	S	S	L	A	R	S	Q	P	V	S	V	V	A	A	A	P	F	Y	S	T	Y	V	E	E	T	T	Y	V	R	S	G	M	Y	K	W	E	G	D	A	W	G	F	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																						S	S	S	S	S							S	S											T	T			T	T							S	T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	A	I	E	R	L	F	K	S	D	I	E	A	K	Q	V	A	A	I	I	F	E	P	V	Q	G	E	G	G	F	N	V	A	P	K	E	L	V	A	A	I	R	R	L	C	D	E	H	G	I	V	M	I	A	D	E	V	Q	S	G	F	A	R	T	G	K	L	F	A	M	D	H	Y	A	D	K	P	D	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.												.	.										.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.												.	.										.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	P	Y	I	E	L	V	T	S	P	.	.	N	N	P	D	G	T	I	R	E	.	.	.	.	.	.	.	.	.	.	.	.	T	V	V	A	K	V	I	H	D	F	A	Y	Y	W	P	H	Y	T	.	.	.	P	I	T	R	R	Q	D	H	D	I	M	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	S	S								S	S	.	.		T	T	T						.	.	.	.	.	.	.	.	.	.	.	.											T	T		S	T	T	T	S	.	.	.				S		B			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.												.	.										.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template SS confidence
															156	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.													.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.				.	.	.	.	.	.	200	.	.	.	.	.
		263	.	.	.	.	.	.	270		.	.	.	.	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.									.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure										.								.																																					.	.	.	.	.	.	.	.
Query SS confidence										.								.																																					.	.	.	.	.	.	.	.
Query Sequence		M	T	M	A	K	S	L	A	.	G	G	M	P	L	S	G	.	V	V	G	N	A	N	I	M	D	A	P	A	P	G	G	L	G	G	T	Y	A	G	N	P	L	A	V	A	A	A	H	A	V	L	N	I	.	.	.	.	.	.	.	.	I	D	K	E	S	L	C	E	R	A	N	Q	L	G	Q	R	L	K	N
Query Conservation										.								.																																					.	.	.	.	.	.	.	.
Alig confidence										.								.																																					.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	T	F	S	K	I	T	G	H	A	G	S	R	I	G	W	A	L	V	K	D	K	E	V	A	K	K	M	V	E	Y	I	I	V	N	S	I	G	V	S	K	E	S	Q	V	R	T	A	K	I	L	N	V	L	K	E	T	C	K	S	E	S	E	S	E	N	F	F	K	Y	G	R	E	M	M	K	N	R	W	E
Template Known Secondary structure											G	G	G																									S	S																					T			S	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		333	.	.	.	.	.	.	340	.	.	.	.															.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.				.	390	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.
Query Sequence		T	L	I	D	A	K	E	S	V	P	A	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	V	R	G	L	G	S	M	I	A	V	E	F	N	D	P	Q	T	G	E	P	S	A	A	I	A	Q	K	I	Q	Q	R	A	L	A	Q	G	L	L	L	L	T	C	.	.	.	G	A	Y	G	N	V	I
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	R	E	V	V	K	E	S	D	A	F	T	L	P	K	Y	P	E	A	F	C	N	Y	F	G	K	S	L	E	S	Y	P	A	F	A	W	L	G	T	K	E	E	T	D	.	.	.	.	.	.	.	.	.	.	L	V	S	E	L	R	R	H	K	V	M	S	R	A	G	E	R	C	G	S	D	K	K	H	V
Template Known Secondary structure									T	S	S	S												T	T	T	T								S							S	S	S			.	.	.	.	.	.	.	.	.	.							T	T	T						T	G	G	G	T	S		T	T
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.											.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	L	Y	P	L	T	I	P	D	A	Q	F	D	A	A	M	K	I	L	Q	D
Query Conservation
Alig confidence				.	.
Template Conservation				.	.
Template Sequence		R	V	.	.	S	M	L	S	R	E	D	V	F	N	V	F	L	E	R	L	A	N
Template Known Secondary structure				.	.		S		S
Template Predicted Secondary structure				.	.
Template SS confidence
		363	.			.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions