Job Description Q5H772 Confidence 99.94% Date Thu Jan 5 12:37:18 GMT 2012 Rank 117 Aligned Residues 326 % Identity 11% Template c2x5fB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate_tyrosine_phenylalanine pyridoxal-5' PDBTitle: crystal structure of the methicillin-resistant2 staphylococcus aureus sar2028, an3 aspartate_tyrosine_phenylalanine pyridoxal-5'-phosphate4 dependent aminotransferase Resolution 1.80 Å

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		63	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.								.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure												.																								.	.	.	.	.	.	.
Query SS confidence												.																								.	.	.	.	.	.	.
Query Sequence		A	A	V	E	Q	Q	L	Q	Q	F	.	T	H	T	A	Y	Q	I	V	P	Y	E	S	Y	V	T	L	A	E	K	I	N	A	L	.	.	.	.	.	.	.	A	P	V	S	G	Q	A	K	T	A	F	F	T	T	G	A	E	A	V	E	N	A	V	K	I	A	R	A	H	T	G	R	P	G	V	I	A	F	S
Query Conservation												.																								.	.	.	.	.	.	.
Alig confidence												.																								.	.	.	.	.	.	.																							.	.	.
Template Conservation																																																																	.	.	.
Template Sequence		S	S	L	D	A	M	F	N	D	L	T	P	D	E	I	F	P	Y	A	P	P	Q	G	I	E	E	L	R	D	L	W	Q	Q	K	M	L	R	D	N	P	E	L	S	I	D	N	M	S	R	P	I	V	T	N	A	L	T	H	G	L	S	L	V	.	.	.	G	D	L	F	V	N	Q	D	D	T	I	L	L	P
Template Known Secondary structure						T	T		S	S			G	G	G	T	S	S				T	T																		T	T			G	G	G	B							S										.	.	.							T	T
Template Predicted Secondary structure																																																																	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.				.	.	130	.	.	.	.	.	.	.	.	.	140	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	F	H	G	R	T	Y	M	T	M	A	L	T	G	K	V	A	P	Y	K	I	G	F	G	P	F	P	G	S	V	Y	H	V	P	Y	P	S	D	L	H	G	I	S	T	Q	D	S	L	D	A	I	E	R	L	F	K	S	D	I	E	A	K	Q	V	A	A	I	I	F	E	P	V	Q	G	E	G	G	F	N
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Sequence		E	H	N	W	G	N	Y	K	L	V	F	N	T	R	N	G	A	N	L	Q	T	Y	P	I	F	D	K	D	G	H	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	D	S	L	V	E	A	L	Q	S	.	.	.	Y	N	K	D	K	V	I	M	I	L	N	Y	P	N	N	P	T	G	Y
Template Known Secondary structure		S	S			T							T	T	T	T										B		T	T	S		B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S										.	.	.			S	S								S	S		T	T	T
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.																	.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230						.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.										.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.		.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.																						.	.	.	.	.	.	.	.	.																					.
Query SS confidence																		.	.	.	.	.																						.	.	.	.	.	.	.	.	.																					.
Query Sequence		V	A	P	K	E	L	V	A	A	I	R	R	L	C	D	E	.	.	.	.	.	H	G	I	V	M	I	A	D	E	V	Q	S	G	F	A	R	T	G	K	L	F	.	.	.	.	.	.	.	.	.	A	M	D	H	Y	A	D	K	P	D	L	M	T	M	A	K	S	L	A	G	.	G	M	P	L	S	G	V	V
Query Conservation																		.	.	.	.	.																						.	.	.	.	.	.	.	.	.																					.
Alig confidence																		.	.	.	.	.																						.	.	.	.	.	.	.	.	.																					.
Template Conservation
Template Sequence		T	P	T	H	K	E	V	T	T	I	V	E	A	I	K	A	L	A	N	K	G	T	K	V	I	A	V	V	D	D	A	Y	Y	G	L	F	Y	E	D	V	Y	T	Q	S	L	F	T	A	L	T	N	L	H	S	N	A	I	L	P	I	R	L	D	G	A	T	K	E	F	F	A	W	G	F	R	V	G	F	M	T
Template Known Secondary structure																					T	T										T	T	T	T		B		S	S				S								T	T			T	T													T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		280	.								.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.						.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.																																				.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.																																				.	.	.	.	.
Query Sequence		G	N	.	.	.	.	.	.	.	A	N	I	M	D	A	P	A	P	G	G	L	G	G	T	Y	A	G	N	P	L	A	V	A	A	A	H	A	V	L	N	I	I	D	K	.	.	.	.	.	E	S	L	C	E	R	A	N	Q	L	G	Q	R	L	K	N	T	L	I	D	A	K	E	S	V	P	A	I	A	A	V
Query Conservation				.	.	.	.	.	.	.																																				.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.																																				.	.	.	.	.
Template Conservation
Template Sequence		F	G	T	S	D	Q	T	T	K	E	V	L	E	A	K	V	K	G	L	I	R	S	N	I	S	S	G	P	L	P	T	Q	S	A	V	K	H	V	L	K	N	N	K	Q	F	D	K	E	I	E	Q	N	I	Q	T	L	K	E	R	Y	E	V	T	K	E	V	V	Y	A	D	Q	Y	H	S	H	W	Q	A	Y	D
Template Known Secondary structure			B																				T	T	T	S	S													T	T	T																											T		G	G	G	T	T	T
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		R	G	L	G	S	M	I	A	V	E	F	N	D	P	Q	T	G	E	P	S	A	A	I	A	Q	K	I	Q	Q	R	A	L	A	Q	.	G	L	L	L	L	T	C	G	A	Y	G	N	V	I	R	F	L	Y	P	L	T	I	P	D	A	Q	F	D	A	A	M	K	I	L	Q	D	A	L	S	D
Query Conservation																																				.
Alig confidence																	.	.	.	.	.	.	.	.												.												.	.							.
Template Conservation																	.	.	.	.	.	.	.	.																								.	.							.
Template Sequence		F	N	S	G	Y	F	M	A	I	K	V	H	D	V	D	.	.	.	.	.	.	.	.	P	E	A	L	R	K	H	L	I	D	K	Y	S	I	G	V	I	A	L	N	A	T	D	.	.	I	R	I	A	F	S	.	C	V	E	K	D	D	I	P	H	V	F	D	S	I	A	K	A	I	D	D
Template Known Secondary structure				B	S	S							S	S	S		.	.	.	.	.	.	.	.												T								S	S	S		.	.					G	G	.	G	S		G	G	G
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.																								.	.							.
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.									.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400			.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions