Job Description Q5H772 Confidence 99.88% Date Thu Jan 5 12:37:18 GMT 2012 Rank 162 Aligned Residues 348 % Identity 15% Template c2okkA_ PDB info PDB header:lyase Chain: A: PDB Molecule:glutamate decarboxylase 2; PDBTitle: the x-ray crystal structure of the 65kda isoform of glutamic acid2 decarboxylase (gad65) Resolution 2.30 Å

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		51	.	.	.	.	.			.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.					.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.
Predicted Secondary structure								.	.																.																								.										.	.	.	.
Query SS confidence								.	.																.																								.										.	.	.	.
Query Sequence		V	L	N	T	G	H	.	.	R	H	P	D	L	V	A	A	V	E	Q	Q	L	Q	Q	.	F	T	H	T	A	Y	Q	I	V	P	Y	E	S	Y	V	T	L	A	E	K	I	N	A	.	L	A	P	V	S	G	Q	A	K	.	.	.	.	T	A	F	F	T	T	G	A	E	A	V	E	N	A	V	K	I	A	R
Query Conservation								.	.																.																								.										.	.	.	.
Alig confidence								.	.																.																								.										.	.	.	.
Template Conservation
Template Sequence		P	R	Y	F	N	Q	L	S	T	G	L	D	M	V	G	L	A	A	D	W	L	T	S	T	A	N	T	N	M	F	T	Y	E	I	A	P	V	F	V	L	L	E	Y	V	T	L	K	K	M	R	E	I	I	G	W	P	G	G	S	G	D	G	I	F	S	P	G	G	A	I	S	N	M	Y	A	M	M	I	A	R
Template Known Secondary structure		T	T			S	S	S	S																					S	S		T	T	T																				T		G	G	G		S						S	S
Template Predicted Secondary structure
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
		123	.												.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.																																																										.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.																																																										.	.	.
Query Sequence		A	H	.	.	.	.	.	.	.	.	.	.	.	T	G	R	P	G	V	I	A	F	S	G	G	F	H	G	R	T	Y	M	T	M	A	L	T	G	K	V	A	P	Y	K	I	G	F	G	P	F	P	G	S	V	Y	H	V	P	Y	P	S	D	L	H	G	I	S	T	Q	D	.	.	.	S	L	D	A	I	E	R
Query Conservation				.	.	.	.	.	.	.	.	.	.	.																																																										.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	K	M	F	P	E	V	K	E	K	G	M	A	A	L	P	R	L	I	A	F	T	S	E	H	S	H	F	S	L	K	K	G	A	A	A	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	T	D	S	V	I	L	I	K	C	D	E	R	G	K	M	I	P	S	D	L	E	R
Template Known Secondary structure						T	T						G	G	G	S									T	T	S		T									T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		G	G	G						B		T	T	S		B
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.																			.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.		.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.
Predicted Secondary structure																									.																																																.
Query SS confidence																									.																																																.
Query Sequence		L	F	K	S	D	I	E	A	K	Q	V	A	A	I	I	F	E	P	V	Q	G	E	G	.	G	F	N	V	A	P	K	E	L	V	A	A	I	R	R	L	C	D	E	H	G	I	V	M	I	A	D	E	V	Q	S	G	F	A	R	T	G	K	L	F	A	M	D	H	Y	A	D	.	K	P	D	L	M	T	M	A
Query Conservation																									.																																																.
Alig confidence																									.						.	.	.	.																																							.
Template Conservation																															.	.	.	.
Template Sequence		R	I	L	E	A	K	Q	K	G	F	V	P	F	L	V	S	A	T	A	G	T	T	V	Y	G	A	F	D	P	.	.	.	.	L	L	A	V	A	D	I	C	K	K	Y	K	I	W	M	H	V	D	A	A	W	G	G	G	L	L	M	S	R	K	H	K	W	K	L	S	G	V	E	R	A	N	S	V	T	W	N
Template Known Secondary structure									T	T										B	S		T	T	T			B			.	.	.	.												T								T	T	G	G	G	G	G	G		T	T	T	G	G	G	G	T	T	G	G	G		S
Template Predicted Secondary structure																															.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.					.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
				267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.											.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure		.	.																													.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																													.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	K	S	L	A	G	G	M	P	L	S	G	V	V	G	N	A	N	I	M	D	A	P	A	P	G	G	L	G	.	.	.	.	.	.	.	.	.	.	G	T	Y	A	G	N	P	L	A	V	A	A	A	H	A	V	L	N	I	I	D	K	E	S	L	C	E	R	A	N	Q	L	G	Q	R	L	K	N	T	L
Query Conservation		.	.																													.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	H	M	M	G	V	P	L	Q	C	S	A	L	L	V	R	E	E	G	L	M	Q	N	C	N	Q	M	H	D	L	S	Y	D	T	G	D	K	A	L	Q	C	G	R	H	V	D	V	F	K	L	W	L	M	W	R	A	K	G	T	T	G	F	E	A	H	V	D	K	C	L	E	L	A	E	Y	L	Y	N	I	I
Template Known Secondary structure								S	S								S	S	T	T											G	G	G			G	G	G	S	S		S	S
Template Predicted Secondary structure
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.							.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.				.	.	.	.	.		400	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.																												.	.	.						.
Query SS confidence																																			.	.	.	.	.	.																												.	.	.						.
Query Sequence		I	D	A	K	E	S	V	P	A	I	A	A	V	R	G	L	G	S	M	I	A	V	E	F	N	D	P	Q	T	G	E	P	S	.	.	.	.	.	.	A	A	I	A	Q	K	I	Q	Q	R	A	L	A	Q	G	L	L	L	L	T	C	G	A	Y	G	N	V	.	.	.	I	R	F	L	Y	.	P	L	T	I	P
Query Conservation																																			.	.	.	.	.	.																												.	.	.						.
Alig confidence		.																																	.	.	.	.	.	.																												.	.	.						.
Template Conservation		.
Template Sequence		.	K	N	R	E	G	Y	E	M	V	F	D	G	K	P	Q	H	T	N	V	C	F	W	Y	I	P	P	S	L	R	T	L	E	E	R	M	S	R	L	S	K	V	A	P	V	I	K	A	R	M	M	E	Y	G	T	T	M	V	S	Y	Q	P	L	G	D	K	V	N	F	F	R	M	V	I	S	N	P	A	A	T
Template Known Secondary structure		.		T	S	T	T				S	S	S	S			S	S	S									T	T	T	T	T									T	T													T	S									T	T												T	T
Template Predicted Secondary structure		.
Template SS confidence
			486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	Q	F	D	A	A	M	K	I	L	Q	D	A	L	S	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	Q	D	I	D	F	L	I	E	E	I	E	R	L	G	Q	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions