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Job DescriptionQ5H772
Confidence99.93%DateThu Jan 5 12:37:18 GMT 2012
Rank127Aligned Residues333
% Identity11%Templatec2dr1A_
PDB info PDB header:transferaseChain: A: PDB Molecule:386aa long hypothetical serine aminotransferase; PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   53......60.........70.........80.........90.........100.........110.........120.........130..
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Query Sequence  NTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTGRPGVIA
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Template Sequence  LFTAGPVACFPEVLEIMKVQMFSHRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNG. . VSKGGKVLV
Template Known Secondary structure 

SSS



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   23......30.........40.........50.........60.........70.........80.........90. ........100
 
   133......140.........150.........160.........170.........180.........190.........200.........210..
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Query Sequence  FSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGG
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Template Sequence  TIIGAFGKRYKEVVESNGRKAV. . . . . . . . . . . . . . . . . VLEYEPGKAVKPEDLDDALRK. . . NPDVEAVTITYNETSTG
Template Known Secondary structure  SSTT
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STTTT
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   101........110.........120.. .......130.........140... ......150.........160
 
   213......220.........230.........240.........250.........260.........270.........280.........290.
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Query Sequence  FNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGGMPLSGVVGNANIMDAPAPG.
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Template Sequence  VLNP. . . . LPELAKVAKEHDKLVFVDAVSAMGGAD. . . IKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMP
Template Known Secondary structure 

....TT

TTTBTTB
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   161... .....170.........180.........190. ........200.........210.........220.........230...
 
   292.......300.........310.........320.........330.........340.. .......350.
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Query Sequence  . . . . . . . . . . . . . . . . . GLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTLIDAKESVP. . . AIAAVRGLG
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Template Conservation                                                                                  
Template Sequence  ERGWYFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESP
Template Known Secondary structure  T

STT
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   234.....240.........250.........260.........270.........280.........290.........300.........310...
 
   352.......360.........370.........380.........390. ........400.........410.........420.
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Query Sequence  SMIAVEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAY. . GNVIRFLYPLTIPDAQFDAAMKILQDALSD
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Template Sequence  TITAVLTPPGIK. . . . . . . GDEVYEAMRKRGFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVINE
Template Known Secondary structure  S

TT

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GGGTTT

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   314.....320..... ....330.........340.........350.........360.........370........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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