Job Description P0AFE8 Confidence 14.37% Date Thu Jan 5 11:26:03 GMT 2012 Rank 14 Aligned Residues 162 % Identity 9% Template c3rkoF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution Resolution 3.00 Å

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		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	H	L	N	L	M	W	I	L	G	G	V	I	G	V	F	L	A	I	D	M	F	L	F	F	F	F	W	E	M	M	L	V	P	M	Y	F	L	I	A	L	W	G	H	K	A	S	D	G	K	T	R	I	T	A	A	T	K	F	F	I	Y	T	Q	A	S	G	L	V	M	L	I	A	I	L	A	L	V	F	V
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.																														.	.	.
Template Conservation																																											.	.	.	.	.	.	.																														.	.	.
Template Sequence		F	Y	I	C	G	L	I	A	I	L	A	T	L	R	V	I	T	H	T	N	P	V	H	A	L	L	Y	L	I	I	S	L	L	A	I	S	G	V	F	F	S	.	.	.	.	.	.	.	L	G	A	Y	F	A	G	A	L	E	I	I	V	Y	A	G	A	I	M	V	L	F	V	F	V	V	M	M	L	.	.	.
Template Known Secondary structure																					S																						.	.	.	.	.	.	.	T	T											T																	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.																														.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.								.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Y	N	A	T	G	V	W	T	F	N	Y	E	E	L	L	N	T	P	M	S	S	G	V	E	Y	L	L	M	L	G	F	F	I	A	F	A	V	K	M	P	V	V	P	L	H	G	W	L	P	D	A	H	S	Q	A	P	T	A	G	S	V	D	L	A	G	I	L	L	K	T	A	A	Y	G	L	L	R	F	S
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	N	L	G	G	S	E	I	E	Q	E	R	Q	W	L	K	P	Q	V	W	I	G	P	A	I	L	S	A	I	M	L	V	V	I	V	Y	A	I	L	G	V	N	D	Q	G	I	D	G	T	P	I	.	.	.	.	.	.	.	.	S	A	K	A	V	G	I	T	L	F	G	P	Y	V
Template Known Secondary structure		.	.	.	.	.	.	.	.			S	S	T	T						T	T		S																							T	T	S											.	.	.	.	.	.	.	.										T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.
Template SS confidence
										75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.									.	.	.	.	.	130	.	.	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	L	F	P	N	A	S	A	E	F	A	P	I	A	M	W	L	G	V	I	G	I	F	Y	G	A	W	M	A	F	A	Q	T	D	I	K	R
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	V	.	.	.	.	.	.	.	.	.	.	E	L	A	S	M	L	L	L	A	G	L	V	V	A	F	H	V	G	R	E	E	R	A	G	E
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.																								S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		139	140	.											.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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