Job Description P77747 Confidence 78.97% Date Thu Jan 5 12:32:27 GMT 2012 Rank 40 Aligned Residues 343 % Identity 13% Template d1a0tp_ SCOP info Transmembrane beta-barrels Porins Maltoporin-like Resolution 2.40

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.																						50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	K	L	D	L	Y	G	K	V	D	G	L	H	Y	F	S	D	N	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	D	G	D	Q	S	Y	A	R	L	G	F	K	G	E	T	Q	I	N	D	Q	L	T	G	Y	G	Q	W	E	Y	N	I	Q	A	N	N	T	E	S
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	G	F	E	F	H	G	Y	A	R	S	G	V	I	M	N	D	S	G	A	S	T	K	S	G	A	Y	I	T	P	A	G	E	T	G	G	A	I	G	R	L	G	N	Q	A	D	T	Y	V	E	M	N	L	E	H	K	Q	T	L	D	N	G	A	T	T	R	F	K	V	M	V	A	D	G	Q	T	S	Y	N	D
Template Known Secondary structure																		T	T	S	S						T	T		S	G	G	G	G	G	T						T	T				S														T	T	S																	S	S
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		89				90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.								.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.					.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure			.	.	.																	.	.	.	.	.	.	.													.						.	.	.	.																									.	.	.	.	.	.	.
Query SS confidence			.	.	.																	.	.	.	.	.	.	.													.						.	.	.	.																									.	.	.	.	.	.	.
Query Sequence		S	.	.	.	K	N	Q	S	W	T	R	L	A	F	A	G	L	K	F	A	.	.	.	.	.	.	.	D	Y	G	S	F	D	Y	G	R	N	Y	G	.	V	M	Y	D	I	.	.	.	.	E	G	W	T	D	M	L	P	E	F	G	G	D	S	Y	T	N	A	D	N	F	M	T	G	.	.	.	.	.	.	.
Query Conservation			.	.	.																	.	.	.	.	.	.	.													.						.	.	.	.																									.	.	.	.	.	.	.
Alig confidence			.	.	.																	.	.	.	.	.	.	.													.						.	.	.	.																									.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	T	A	S	T	S	D	L	N	V	R	Q	A	F	V	E	L	G	N	L	P	T	F	A	G	P	F	K	G	S	T	L	W	A	G	K	R	F	D	R	D	N	F	D	I	H	W	I	D	S	D	V	V	F	L	A	G	T	G	G	G	I	Y	D	V	K	W	N	D	G	L	R	S	N	F	S	L	Y	G	R
Template Known Secondary structure				G	G	G														S		T	T			G	G	G	T	T											T	T					G	G	G	T					B														T	T	T
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
								147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.						.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																																			.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																																																			.	.	.	.	.
Query Sequence		.	.	.	.	.	.	R	A	N	G	V	A	T	Y	R	N	T	D	F	F	G	L	V	N	G	L	N	F	A	V	Q	Y	Q	G	N	N	E	G	A	S	N	G	Q	E	G	T	N	N	G	R	D	V	R	H	E	N	G	D	G	W	G	L	S	T	T	Y	D	L	G	M	G	F	.	.	.	.	.	S	A	G
Query Conservation		.	.	.	.	.	.																																																																			.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																																																			.	.	.	.	.
Template Conservation
Template Sequence		N	F	G	D	I	D	D	S	S	N	S	V	Q	N	Y	I	L	T	M	N	H	F	A	G	P	L	Q	M	M	V	S	G	L	R	A	K	D	N	D	E	R	K	D	S	N	G	N	L	A	K	G	D	A	A	N	T	G	V	H	A	L	L	G	L	H	N	D	S	F	Y	G	L	R	D	G	S	S	K	T	A
Template Known Secondary structure						T	T		G	G	G														T	T											T	T	G	G	G		B		S	S	S	S	B	S		S	S			S														S	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		216	.	.	.	220	.	.	.	.	.	.					.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure													.	.	.	.
Query SS confidence													.	.	.	.
Query Sequence		A	A	Y	T	S	S	D	R	T	N	D	.	.	.	.	Q	V	N	H	T	A	A	G	G	D	K	A	D	A	W	T	A	G	L	K	Y	D	A	N	N	I	Y	L	A	T	M	Y	S	E	T	R	N	M	T	P	F	G	D	S	D	Y	A	V	A	N	K	T	Q	N	F	E	V	T	A	Q	Y	Q	F	D	F
Query Conservation													.	.	.	.
Alig confidence													.	.	.	.																																														.	.	.
Template Conservation																																																														.	.	.
Template Sequence		L	L	Y	G	H	G	L	G	A	E	V	K	G	I	G	S	D	G	A	L	R	P	G	A	D	T	W	R	I	A	S	Y	G	T	T	P	L	S	E	N	W	S	V	A	P	A	M	L	A	Q	R	S	K	D	R	Y	A	D	G	D	.	.	.	S	Y	Q	W	A	T	F	N	L	R	L	I	Q	A	I	N	Q
Template Known Secondary structure								T	T		S		S	B	T	T			T	T			T	T														S	S	S	S														S	S	S	S	T	T		.	.	.															S	S	S
Template Predicted Secondary structure																																																														.	.	.
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370				.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.			320	.	.	.	.	.	.	.	.	.	330	.	.			.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.					.	.	.	.	.	.	.	360	.	.	.
Predicted Secondary structure																														.	.														.	.																					.	.	.	.
Query SS confidence																														.	.														.	.																					.	.	.	.
Query Sequence		G	L	R	P	A	V	S	F	L	M	S	K	G	R	D	L	H	A	A	G	G	A	D	N	P	A	G	V	.	.	D	D	K	D	L	V	K	Y	A	D	I	G	A	.	.	T	Y	Y	F	N	K	N	M	S	T	Y	V	D	Y	K	I	N	L	L	D	.	.	.	.	E	D	D	S	F	Y	A	A	N	G	I
Query Conservation																														.	.														.	.																					.	.	.	.
Alig confidence																														.	.														.	.																					.	.	.	.
Template Conservation
Template Sequence		N	F	A	L	A	Y	E	G	S	Y	Q	Y	M	D	L	K	P	E	G	Y	N	D	R	Q	A	V	N	G	S	F	Y	K	L	T	F	A	P	T	F	K	V	G	S	I	G	D	F	F	S	R	P	E	I	R	F	Y	T	S	W	M	D	W	S	K	K	L	N	N	Y	A	S	D	D	A	L	G	S	D	G	F
Template Known Secondary structure		S																	T	T	G	G	G																			S	S		T	T		T	T																G	G	G	G	G	S		S	S	S	S	T	T	B	T	T	B
Template Predicted Secondary structure
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
		364	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	D	D	I	V	A	L	G	L	V	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	S	G	G	E	W	S	F	G	V	Q	M
Template Known Secondary structure			S	S
Template Predicted Secondary structure
Template SS confidence
		468	.	470	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions