Job Description P77747 Confidence 100.00% Date Thu Jan 5 12:32:27 GMT 2012 Rank 3 Aligned Residues 333 % Identity 55% Template c3nsgA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi Resolution 2.79 Å

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		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.		.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																													.																																							.
Query SS confidence																													.																																							.
Query Sequence		E	V	Y	N	K	D	G	N	K	L	D	L	Y	G	K	V	D	G	L	H	Y	F	S	D	N	S	A	.	K	D	G	D	Q	S	Y	A	R	L	G	F	K	G	E	T	Q	I	N	D	Q	L	T	G	Y	G	Q	W	E	Y	N	I	Q	A	N	N	T	E	.	S	S	K	N	Q	S	W	T	R	L	A	F	A
Query Conservation																													.																																							.
Alig confidence																													.																																							.
Template Conservation
Template Sequence		E	I	Y	N	K	D	G	N	K	L	D	L	Y	G	K	A	V	G	R	H	V	W	T	T	T	G	D	S	K	N	A	D	Q	T	Y	A	Q	I	G	F	K	G	E	T	Q	I	N	T	D	L	T	G	F	G	Q	W	E	Y	R	T	K	A	D	R	A	E	G	E	Q	Q	N	S	N	L	V	R	L	A	F	A
Template Known Secondary structure							T	T																		S	T	T																			S	S	S	S														S	S		T	T			S	T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.			.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.
Query SS confidence																																								.	.
Query Sequence		G	L	K	F	A	D	Y	G	S	F	D	Y	G	R	N	Y	G	V	M	Y	D	I	E	G	W	T	D	M	L	P	E	F	G	G	D	S	Y	T	.	.	N	A	D	N	F	M	T	G	R	A	N	G	V	A	T	Y	R	N	T	D	F	F	G	L	V	N	G	L	N	F	A	V	Q	Y	Q	G	N	N	E	G
Query Conservation																																								.	.
Alig confidence																																								.	.																																								.
Template Conservation																																																																																	.
Template Sequence		G	L	K	Y	A	E	V	G	S	I	D	Y	G	R	N	Y	G	I	V	Y	D	V	E	S	Y	T	D	X	A	P	Y	F	S	G	E	T	W	G	G	A	Y	T	D	N	Y	X	T	S	R	A	G	G	L	L	T	Y	R	N	S	D	F	F	G	L	V	D	G	L	S	F	G	I	Q	Y	Q	G	K	N	Q	.
Template Known Secondary structure						T	T	T											T	T						T	T			S	S	S	S	S	S		S	T	T	T	S	S	S	S	S	T	T	S	S											S	S	S	S	S	S		S	S											B		.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	N	G	Q	E	G	T	N	N	G	R	D	V	R	H	E	N	G	D	G	W	G	L	S	T	T	Y	D	L	G	M	G	F	S	A	G	A	A	Y	T	S	S	D	R	T	N	D	Q	V	N	H	T	A	A	G	G	D	K	A	D	A	W	T	A	G	L	K	Y	D	A	N	N	I	Y	L	A	T	M	Y
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.																							.																		.
Template Conservation		.	.	.	.	.	.	.	.	.																							.																		.
Template Sequence		.	.	.	.	.	.	.	.	.	D	N	H	S	I	N	S	Q	N	G	D	G	V	G	Y	T	X	A	Y	E	F	D	.	G	F	G	V	T	A	A	Y	S	N	S	K	R	T	N	D	Q	.	Q	D	R	D	G	N	G	D	R	A	E	S	R	A	V	G	A	K	Y	D	A	N	N	V	Y	L	A	A	V	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	S	S	S		G	G	G		B		S											T	.	T														S	T	T	.	S	S	S	S	S			S														T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																							.																		.
Template SS confidence
											161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.				.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure																				.	.	.
Query SS confidence																				.	.	.
Query Sequence		S	E	T	R	N	M	T	P	F	G	D	S	D	Y	A	V	A	N	.	.	.	K	T	Q	N	F	E	V	T	A	Q	Y	Q	F	D	F	G	L	R	P	A	V	S	F	L	M	S	K	G	R	D	L	H	A	A	G	G	A	D	N	P	A	G	V	D	D	K	D	L	V	K	Y	A	D	I	G	A	T	Y	Y
Query Conservation																				.	.	.
Alig confidence																				.	.	.																																									.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.
Template Sequence		A	E	T	R	N	X	S	I	V	E	N	T	V	T	D	T	V	E	X	A	N	K	T	Q	N	L	E	V	V	A	Q	Y	Q	F	D	F	G	L	R	P	A	I	S	Y	V	Q	S	K	G	K	Q	L	N	G	A	G	G	S	A	D	L	.	.	.	.	.	.	.	.	A	K	Y	I	Q	A	G	A	T	Y	Y
Template Known Secondary structure					S	S							T	T	T							S														T	T	S														S		T	T	T	T	S					.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290									.	.	.	.	.	.	.	.	.	300	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	N	K	N	M	S	T	Y	V	D	Y	K	I	N	L	L	D	E	D	D	S	F	Y	A	A	N	G	I	S	T	D	D	I	V	A	L	G	L	V	Y	Q	F
Query Conservation
Alig confidence																							.	.
Template Conservation																							.	.
Template Sequence		F	N	K	N	X	N	V	W	V	D	Y	R	F	N	L	L	D	E	N	D	Y	.	.	S	S	S	Y	V	G	T	D	D	Q	A	A	V	G	I	T	Y	Q	F
Template Known Secondary structure				S	S																S	S	.	.		T	T	T	T		S	S
Template Predicted Secondary structure																							.	.
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.			.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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