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Job DescriptionP77747
Confidence98.14%DateThu Jan 5 12:32:27 GMT 2012
Rank17Aligned Residues325
% Identity10%Templatec3jtyB_
PDB info PDB header:transport proteinChain: B: PDB Molecule:benf-like porin; PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5
Resolution2.58 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40.........50........ .60...... ...70.........80........ .90.....
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Query Sequence  DLYGKVDGLHYFSDNSAKDGDQSYAR. . . LGFKGETQ. . . . . . . INDQLTGYGQWEYNIQANNTES. . . . . . . SKNQSWT
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Template Sequence  QANLTLRNFYFNRNFTNPTKAQGKAEEWTQSFILDAKSGFTQGTVGFGMDVLGLYSLKLDGGKGTGGTQLLPLPADNFGR
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SSS

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   38.40.........50.........60.........70.........80.........90.........100.........110.......
 
   96...100.........110...... ...120.........130.........140.........150.........160.........170...
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Query Sequence  RLAFAGLKFADYGSFDYGRNY. . GVMYDIEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFFGLVNGLNFAVQYQ
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Template Sequence  LGVAFKARLSQT. EVKVGEWMPVLPILRSDDGRSLPQTFRGGQITSKEIAGLTLYGGQFRANSPRDDSSMSDMSMFGKAA
Template Known Secondary structure  TT.

TT


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B
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   123......130.... .....140.........150.........160.........170.........180.........190.........200.
 
   174.....180.........190...... ...200.........210.........220.........230.........240....
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Query Sequence  GNNEGASNGQEGTNNGRDVRHEN. . . . . . . . . GDGWGLSTTYDLGMGFSAGAAYTSSDRTNDQVNHTAAGGDKADAWTAG
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Template Sequence  FTSDRFNFQGAEYAFNDKRTQIALWNAQLKDIYSQQFINLIHSQPLG. DWTLGANLGFFYGKEDGSARAGDMENRTWSGL
Template Known Secondary structure  S
TTTTTTT
S.S

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   202.......210.........220.........230.........240........ .250.........260.........270.........280
 
   245....250.........260.........270.. .......280.........290 .........300......
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Query Sequence  LKYDANNIYLATMYSETRNMTPFGDSDY. . . . . . . . . . . . . . AVANKTQNFEVTAQYQFD. . . . FGLRPAVSFLMSKGRD
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Template Sequence  FSAKYGGNTFYVGLQKLTGDSAWMRVNGTSGGTLANDSYNASYDNAKEKSWQVRHDYNFAALGVPGLTLMNRYISGSNVH
Template Known Secondary structure  TTSS



BTT


TTSTT

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TTTTT
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   281........290.........300.........310.........320.........330.........340.........350.........360
 
   307..310.........320.........330....... ..340.........350.........360.........370.......
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Query Sequence  LHAAGGADNPAGVDDKDLVKYADIGATYYFN. . . . KNMSTYVDYKINLLDEDDSFYAANGISTDDIVALGLVYQF
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Template Sequence  TATV. . . . . . . . . . SDGKEWGRESEVAYTVQSGTLKNLNLKWRNSTMRRD. . . . . . . . FSNNEFDENRLIISYPL
Template Known Secondary structure  TT..........

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   361... .....370.........380.........390.........400 .........410.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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