Job Description P77747 Confidence 96.97% Date Thu Jan 5 12:32:27 GMT 2012 Rank 28 Aligned Residues 212 % Identity 15% Template c3brzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:todx; PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx Resolution 3.20 Å

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		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	L	V	N	G	L	N	F	A	V	Q	Y	Q	G	N	N	E	G	A	S	N	G	Q	E	G	T	N	N	G	R	D	V	R	H	E	N	G	D	G	W	G	L	S	T	T	Y	D	L	G	M	G	F	S	A	G	A	A	Y	T	S	S	D	R	T	N	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	L	F	V	S	S	G	L	G	T	E	Y	G	S	K	S	F	L	S	Q	T	E	N	G	I	Q	T	S	F	D	N	S	S	R	L	I	V	L	R	A	P	I	G	F	S	Y	Q	A	T	S	K	L	T	F	G	A	S	V	D	L	V	W	T	S	L	N	L	E	L	L	L	P	S	S	Q	V	G	A	L	T
Template Known Secondary structure															T	T	S	G	G	G			T	T	T																								S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
																											227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.	.	.	.	.	.	260	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	V	N	H	T	A	A	G	G	D	K	A	D	A	W	T	A	G	L	K	Y	D	A	N	N	.	I	Y	L	A	T	M	Y	S	E	T	R	N	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	Q	G	N	L	S	G	G	L	V	P	S	L	A	G	F	V	G	T	G	G	A	A	H	F	S	L	S	A	G	G	A	V	D	A	V	G	W	G	G	R	L	G	L	T	Y	K	L	T	D	N	T	V	L	G	A	M	Y	N	F	K	T	S	V	G	D	L	E	G	K	A	T	L	S	A	I	S	G	D	G
Template Known Secondary structure			T	T					S						T	T	T	S	G	G	G												T	T																S	S	S											B																T	T	S
Template Predicted Secondary structure
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
					265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320									.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure		.	.	.																																																									.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																																																									.	.	.	.	.	.	.	.
Query Sequence		.	.	.	T	P	F	G	D	S	D	Y	A	V	A	N	K	T	Q	N	F	E	V	T	A	Q	Y	Q	F	D	F	G	L	R	P	A	V	S	F	L	M	S	K	G	R	D	L	H	A	A	G	G	A	D	N	P	A	G	V	D	.	.	.	.	.	.	.	.	D	K	D	L	V	K	Y	A	D	I	G	A	T
Query Conservation		.	.	.																																																									.	.	.	.	.	.	.	.
Alig confidence		.	.	.																																																									.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	L	P	L	D	G	D	I	R	V	K	N	F	E	M	P	A	S	L	T	L	G	L	A	H	Q	F	N	E	R	W	V	V	A	A	D	I	K	R	A	Y	W	G	D	V	M	D	S	M	N	V	A	F	I	S	Q	L	G	G	I	D	V	A	L	P	H	R	Y	Q	D	I	T	V	A	S	I	G	T	A
Template Known Secondary structure																	B												S	S	S	S													T	T			S									S	S
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Y	F	N	K	N	M	S	T	Y	V	D	Y	K	I	N	L	L	D	E	D	D	S	F	Y	A	A	N	G	I	S	T	D	D	I	V	A	L	G	L	V	Y	Q	F
Query Conservation
Alig confidence																						.	.	.	.	.
Template Conservation																						.	.	.	.	.
Template Sequence		Y	K	Y	N	N	D	L	T	L	R	A	G	Y	S	Y	A	Q	L	I	L	.	.	.	.	.	P	V	I	P	A	Y	L	K	R	H	V	T	F	G	G	E	Y	D	F
Template Known Secondary structure				S	S	S	S															.	.	.	.	.	T	T	S					S											S
Template Predicted Secondary structure																						.	.	.	.	.
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.						.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions