Job Description P77747 Confidence 97.30% Date Thu Jan 5 12:32:27 GMT 2012 Rank 26 Aligned Residues 313 % Identity 12% Template c2y0hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable porin; PDBTitle: crystal structure of pseudomonas aeruginosa opdl Resolution 2.20 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.						.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.
Query SS confidence																																		.	.	.	.	.
Query Sequence		D	L	Y	G	K	V	D	G	L	H	Y	F	S	D	N	S	A	K	D	G	D	Q	S	Y	A	R	L	G	F	K	G	E	.	.	.	.	.	T	Q	I	N	D	Q	L	T	G	Y	G	Q	W	E	Y	N	I	Q	A	N	N	T	E	S	S	K	N	Q	S	W	T	R	L	A	F	A	G	L	K	F	A	D	Y
Query Conservation																																		.	.	.	.	.
Alig confidence																																		.	.	.	.	.																					.	.	.	.	.	.	.
Template Conservation																																																											.	.	.	.	.	.	.
Template Sequence		S	A	H	L	D	L	R	N	F	Y	Q	L	R	D	Y	R	Q	S	Q	A	G	N	W	S	Q	G	F	V	L	R	L	Q	S	G	F	T	G	G	P	L	G	F	G	L	D	A	T	G	L	L	G	V	K	L	P	V	D	.	.	.	.	.	.	.	D	Y	S	H	L	G	L	T	A	K	L	R	Y	S	Q	T
Template Known Secondary structure																																						S	S	S																			.	.	.	.	.	.	.														T	T
Template Predicted Secondary structure																																																											.	.	.	.	.	.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.								.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		108	.	110	.	.	.	.	.			.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160													.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure										.	.																																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.																																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	S	F	D	Y	G	R	N	.	.	Y	G	V	M	Y	D	I	E	G	W	T	D	M	L	P	E	F	G	G	D	S	Y	T	N	A	D	N	F	M	T	G	R	A	N	G	V	A	T	Y	R	N	T	D	F	F	.	.	.	.	.	.	.	.	.	.	.	.	G	L	V	N	G	L	N	F	A	V	Q	Y	Q
Query Conservation										.	.																																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.								.	.																																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	Q	L	Q	V	G	I	L	M	P	Q	L	P	V	A	F	R	D	D	V	R	L	L	P	Q	T	F	D	G	A	L	L	T	S	S	E	I	E	G	L	T	L	T	A	G	Q	L	W	K	S	R	T	R	E	S	D	D	M	Y	I	M	G	R	D	K	A	H	A	S	D	E	F	N	L	A	G	A	T	Y	A
Template Known Secondary structure		.												T	T						S	S	S	S														S	T	T																			B		B	T	T	S		T	T	S		B	S
Template Predicted Secondary structure		.
Template SS confidence
			105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	N	N	E	G	A	S	N	G	Q	E	G	T	N	N	G	R	D	V	R	H	E	N	G	D	G	W	G	L	S	T	T	Y	D	L	G	M	G	F	S	A	G	A	A	Y	T	S	S	D	R	T	N	D	Q	V	N	H	T	A	A	G	G	D	K	A	D	A	W	T	A	G	L	K	Y	D	A	N	N	I	Y
Query Conservation
Alig confidence																				.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.
Template Sequence		F	T	P	R	L	S	A	S	Y	Y	Y	G	Q	L	K	D	I	Y	.	.	.	.	.	.	R	Q	H	Y	L	G	L	L	H	T	L	P	L	G	E	G	L	S	L	R	S	D	L	R	Y	F	D	S	G	E	D	G	A	A	I	S	G	P	V	D	N	R	N	L	N	A	M	L	T	L	R	A	G	A	H	A
Template Known Secondary structure		S	S	S	S											T	T	T		.	.	.	.	.	.														S	T	T																T	T		T	T																	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.							.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.															.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290					.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Query Sequence		L	A	T	M	Y	S	E	T	R	N	M	T	P	F	G	D	S	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	V	A	N	K	T	Q	N	F	E	V	T	A	Q	Y	Q	F	D	.	.	.	.	F	G	L	R	P	A	V	S	F	L	M	S	K	G	R	D	L	H	A	A	G	G	A	D	N
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.
Template Conservation
Template Sequence		F	G	I	G	V	Q	K	M	I	G	N	D	A	F	P	V	L	N	G	Y	T	T	P	Y	V	A	N	L	M	A	Y	Q	T	F	T	R	P	Q	E	K	S	W	Q	L	R	Y	D	Y	D	F	A	G	L	G	L	P	G	L	N	L	M	T	R	Y	V	Q	G	R	D	I	D	R	G	A	G	R	A	D	D	S
Template Known Secondary structure											S	S	S					B	T	T	T		B				T	T			S	S			S		S	T	T													T	T	T	T		T	T																S	T	T
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.					.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence		P	A	G	V	D	D	K	D	L	V	K	Y	A	D	I	G	A	T	Y	Y	F	N	.	.	.	.	K	N	M	S	T	Y	V	D	Y	K	I	N	L	L	D	E	D	D	S	F	Y	A	A	N	G	I	S	T	D	D	I	V	A	L	G	L	V	Y	Q	F
Query Conservation																								.	.	.	.
Alig confidence			.	.	.	.	.	.	.	.	.													.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.
Template Sequence		E	.	.	.	.	.	.	.	.	.	W	E	R	N	T	D	L	S	Y	V	I	Q	S	G	P	L	K	S	V	A	L	K	W	R	N	I	T	Y	R	S	R	Y	G	.	.	.	.	.	.	.	.	.	A	D	L	D	E	N	R	F	I	V	N	Y	T	L
Template Known Secondary structure			.	.	.	.	.	.	.	.	.													S	S	T	T	T	T													S	S	S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.
Template SS confidence
		341										.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.										.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions