Return to main results Retrieve Phyre Job Id

Job DescriptionP77747
Confidence97.75%DateThu Jan 5 12:32:27 GMT 2012
Rank23Aligned Residues324
% Identity11%Templatec2odjA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:porin d; PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40.........50.........60......... 70.........80.........90.........100.........
Predicted Secondary structure 











...














Query SS confidence 




































. . .







































Query Sequence  DLYGKVDGLHYFSDNSAKDGDQSYARLGFKGETQIND. . . QLTGYGQWEYNIQANNTESSKNQSWTRLAFAGLKFADYGS
Query Conservation   
 
 
                  



  
   
  ...
  
   

                 
 




     
 
Alig confidence 














.




















...














.......















.
Template Conservation 
    

  
  

 .       
  
   

   
  


 
         
  .......      
 

     
. 
Template Sequence  SLDLLLRNYYFNRDG. KRVDWTQGFLTTYESGFTQGTVGFGVDAFGYLGLKLDGT. . . . . . . DYSRAGGAVKVRISKT. X
Template Known Secondary structure 
.





SSS

.......

TT.
Template Predicted Secondary structure 


.








.......





.
Template SS confidence 















































































   18.20.........30.. .......40.........50.........60.........70. ........80....... .
 
   110...... ...120..... ....130.........140.........150.........160.........170.........180....
Predicted Secondary structure  ..


...










































Query SS confidence 






. .








. . .


























































Query Sequence  FDYGRNY. . GVMYDIEGW. . . TDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFFGLVNGLNFAVQYQGNNEGASNGQE
Query Conservation 
  

  ..         ... 
                          
          
                   
Alig confidence 






..








...


























































Template Conservation 

 


    
 
     
  
 

 
  
    
  
 
   

                   

 
     
      
Template Sequence  LKWGEXQPTAPVFAAGGSRLFPQTATGFQLQSSEFEGLDLEAGHFTEELYATYAGETAKSADFIGGRYAITDNLSASLYG
Template Known Secondary structure 


STTB




SSS




STT


TTT

S

SSSS
Template Predicted Secondary structure 

























Template SS confidence 















































































   113......120.........130.........140.........150.........160.........170.........180.........190..
 
   185....190.........200.........210.........220.........230.........240.........250.........260....
Predicted Secondary structure 








































Query SS confidence 















































































Query Sequence  GTNNGRDVRHENGDGWGLSTTYDLGMGFSAGAAYTSSDRTNDQVNHTAAGGDKADAWTAGLKYDANNIYLATMYSETRNM
Query Conservation                       
                                     
  
      
   
      
Alig confidence 






......


































































Template Conservation 
   
  ......   
    
   
           
      
    
  
                    
    

Template Sequence  AELEDIY. . . . . . RQYYLNSNYTIPLASDQSLGFDFNIYRTNDEGKAKAGDISNTTWSLAAAYTLDAHTFTLAYQKVHGD
Template Known Secondary structure  TTT......TT

TT
SS




TT

SS
Template Predicted Secondary structure 

......





















Template SS confidence 















































































   204.....210 .........220.........230.........240.........250.........260.........270.......
 
   265.. ..270.........280......... 290.........300.........310..... ....320....
Predicted Secondary structure 


.............









....














...








Query SS confidence 


. . . . . . . . . . . . .





















. . . .

























. . .








Query Sequence  TPF. . . . . . . . . . . . . GDSDYAVANKTQNFEVTAQYQF. . . . DFGLRPAVSFLMSKGRDLHAAGGADN. . . PAGVDDKDL
Query Conservation     .............                   
  ....         
                ...         
Alig confidence 


.............





















....

























...








Template Conservation                       
    
 
      


   
 


     
  
                         
Template Sequence  QPFDYIGFGSIFLANSVQYSDFNGPGEKSWQARYDLNLASYGVPGLTFXVRYINGKDIDGTKXSDNNVGYKNYGYGEDGK
Template Known Secondary structure  S







SSTT

SS




TT

TTSSS
TT

TT

SS
TTTSSS


SS
Template Predicted Secondary structure 



















































Template SS confidence 















































































   278.280.........290.........300.........310.........320.........330.........340.........350.......
 
   325....330....... ..340.........350.........360.........370.......
Predicted Secondary structure 

....



















Query SS confidence 












. . . .







































Query Sequence  VKYADIGATYYFN. . . . KNMSTYVDYKINLLDEDDSFYAANGISTDDIVALGLVYQF
Query Conservation        
  
  
....
    
  
                        

 
  
Alig confidence 












....














......


















Template Conservation    
 
    
    
 





  


    
......      
    

   
 
Template Sequence  HHETNLEAKYVVQSGPAKDLSFRIRQAWHRAN. . . . . . ADQGEGDQNEFRLIVDYPL
Template Known Secondary structure 

SSTTTT

......TTTSS
SB
Template Predicted Secondary structure 










......







Template SS confidence 
























































   367..370.........380.........390........ .400.........410.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions