Job Description P77747 Confidence 99.89% Date Thu Jan 5 12:32:27 GMT 2012 Rank 9 Aligned Residues 339 % Identity 12% Template c2o4vA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin p; PDBTitle: an arginine ladder in oprp mediates phosphate specific transfer across2 the outer membrane Resolution 1.94 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.						.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																		.	.	.	.	.
Query SS confidence																																		.	.	.	.	.
Query Sequence		N	K	D	G	N	K	L	D	L	Y	G	K	V	D	G	L	H	Y	F	S	D	N	S	A	K	D	G	D	Q	S	Y	A	.	.	.	.	.	R	L	G	F	K	G	E	T	Q	I	N	D	Q	L	T	G	Y	G	Q	W	E	Y	N	I	Q	A	N	N	T	E	S	S	K	N	Q	S	W	T	R	L	A	F	A
Query Conservation																																		.	.	.	.	.
Alig confidence																																		.	.	.	.	.																							.	.	.	.
Template Conservation																																																													.	.	.	.
Template Sequence		T	D	K	E	F	S	F	K	L	G	G	R	L	Q	A	D	Y	G	R	F	D	G	Y	Y	T	N	N	G	N	T	A	D	A	A	Y	F	R	R	A	Y	L	E	F	G	G	T	A	Y	R	D	W	K	Y	Q	I	N	Y	D	L	.	.	.	.	S	R	N	V	G	N	D	S	A	G	Y	F	D	E	A	S	V
Template Known Secondary structure		T	T	S	S																			T	T	B	S	S	S	S																			T	T	T									T	.	.	.	.	T			S	S	B	T	T	T	B
Template Predicted Secondary structure																																																													.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.					.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	K	F	A	D	Y	G	S	F	D	Y	G	R	N	Y	G	V	M	Y	D	I	E	G	W	T	D	M	L	P	E	F	G	G	D	S	Y	T	N	A	D	N	F	M	T	G	R	A	N	G	V	A	T	Y	R	N	T	D	F	F	G	L	V	N	G	L	N	F	A	V	Q	Y	Q	G	N	N	E	G	A	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	Y	T	G	F	N	P	V	N	L	K	F	G	R	F	Y	T	D	F	G	L	E	K	A	T	S	S	K	W	V	T	A	L	E	R	N	L	T	Y	D	I	A	D	W	V	N	D	N	V	G	T	G	I	Q	A	S	S	V	V	G	G	M	A	F	L	S	G	S	V	F	S	E	N	N	N	D	T	D	G	D
Template Known Secondary structure					T	T	T	T	S																	S		T	T	T		S	S	S	S			G	G	G	G	G	S	G	G	G	G			S											T	T	T														B	T	T	S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		181	.	.	.																							.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	G	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	N	N	G	R	D	V	R	H	E	N	G	D	G	W	G	L	S	T	T	Y	D	L	G	M	G	F	S	A	G	A	A	Y	T	S	S	D	R	T	N	D	Q	V	N	H	T	A	A	G	G	D	K	A
Query Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	V	K	R	Y	N	L	R	G	V	F	A	P	L	H	E	P	G	N	V	V	H	L	G	L	Q	Y	A	Y	R	D	L	E	D	S	A	V	D	T	R	I	R	P	R	M	G	M	R	G	V	S	T	N	G	G	N	D	A	G	S	N	G	N	R	G	L	F	G	G	S	S	A	V	E	G	L	W	K	D	D
Template Known Secondary structure																		T	T															T	T	B						B				T	T		G	G	G	S		S	S	B				G	G	G	B						B						T	T	S
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.																								.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	A	W	T	A	G	L	K	Y	D	A	N	N	I	Y	L	A	T	M	Y	S	E	T	R	N	M	T	P	F	G	D	S	D	Y	A	V	A	N	K	T	Q	N	F	E	V	T	A	Q	Y	Q	F	D	F	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	P
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.	.	.	.
Template Sequence		S	V	W	G	L	E	G	A	W	A	L	G	A	F	S	A	Q	A	E	Y	L	R	R	T	V	K	A	E	R	D	R	E	D	L	.	.	.	.	K	A	S	G	Y	Y	A	Q	L	A	Y	T	L	T	G	E	P	R	L	Y	K	L	D	G	A	K	F	D	T	I	K	P	E	N	K	E	I	G	A	W	E	L
Template Known Secondary structure													T	T																T	T					.	.	.	.													T	T								T	T	T	T								S		T	T	T
Template Predicted Secondary structure																																				.	.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.					.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	V	S	F	L	M	S	K	G	R	D	L	H	A	A	G	G	A	D	N	P	A	G	V	D	D	K	D	L	V	K	Y	A	D	I	G	A	T	Y	Y	F	N	K	N	M	S	T	Y	V	D	Y	K	I	N	L	L	D	E	D	D	S	F	Y	A	A	N	G	I	S	T	D	D	I	V	A	L	G	L	V	Y
Query Conservation
Alig confidence																	.	.																																												.	.	.
Template Conservation																	.	.																																												.	.	.
Template Sequence		F	Y	R	Y	D	S	I	K	V	E	D	D	N	I	V	.	.	V	D	S	A	T	R	E	V	G	D	A	K	G	K	T	H	T	L	G	V	N	W	Y	A	N	E	A	V	K	V	S	A	N	Y	V	K	A	K	T	D	K	I	S	.	.	.	N	A	N	G	D	D	S	G	D	G	L	V	M	R	L	Q	Y
Template Known Secondary structure													T	T			.	.	S			S	S	B		S	S																S	S	S														S	B		.	.	.		T	T
Template Predicted Secondary structure																	.	.																																												.	.	.
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.				.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		376	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		410	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions