Job Description P02919 Confidence 100.00% Date Thu Jan 5 10:57:35 GMT 2012 Rank 9 Aligned Residues 363 % Identity 21% Template d2olua2 SCOP info beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase Resolution 2.90

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		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.						.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.
Query SS confidence																									.	.	.	.	.
Query Sequence		G	G	V	I	S	P	Q	P	A	F	M	Q	L	V	R	Q	E	L	Q	A	K	L	G	.	.	.	.	.	D	K	V	K	D	L	S	G	V	K	I	F	T	T	F	D	S	V	A	Q	D	A	A	E	K	A	A	V	E	G	I	P	A	L	K	K	Q	R	K	L	S	D	L	E	T	A	I	V	V	V	D	R
Query Conservation																									.	.	.	.	.
Alig confidence																									.	.	.	.	.																																		.	.	.	.	.
Template Conservation																																																															.	.	.	.	.
Template Sequence		T	N	Q	D	S	E	Y	N	S	Y	V	N	F	V	K	S	E	L	X	N	N	K	A	F	K	D	E	N	L	G	N	V	L	Q	S	G	I	K	I	Y	T	N	X	D	K	D	V	Q	K	T	L	Q	N	D	V	D	N	G	S	F	Y	.	.	.	.	.	K	N	K	D	Q	Q	V	G	A	T	I	L	D	S
Template Known Secondary structure					S	G	G	G												T	T	S	T	T	T	T	T	S						T	T	S																								S			.	.	.	.	.	S	S	T	T										T
Template Predicted Secondary structure																																																															.	.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.						.	.	.	.	.	.	360	.	.	.	.	.	.	.
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.		.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		F	S	G	E	V	R	A	M	V	G	G	S	E	P	Q	F	A	G	Y	N	R	A	M	Q	A	R	R	S	I	G	S	L	A	K	P	A	T	.	Y	L	T	A	L	S	Q	P	K	I	Y	R	L	N	T	W	I	A	D	A	P	I	A	L	R	Q	P	N	G	Q	V	W	S	P	Q	N	D	D	R	R	Y	S
Query Conservation																																							.
Alig confidence																																							.										.																		.	.	.	.											.
Template Conservation																																																	.																		.	.	.	.											.
Template Sequence		K	T	G	G	L	V	A	I	S	G	G	R	D	F	K	D	V	V	N	R	N	Q	A	T	D	P	H	P	T	G	S	S	L	K	P	F	L	A	Y	G	P	A	I	E	N	X	K	.	W	A	T	N	H	A	I	Q	D	E	S	S	Y	Q	V	D	G	.	.	.	.	S	T	F	R	N	Y	D	T	K	S	.
Template Known Secondary structure		T	T		B							S	T	T			T	T	T	S			T	T	T	S					G	G	G	G					T								T		.			T	T	B						S	S				T	T	.	.	.	.						T	T	S			.
Template Predicted Secondary structure																																																	.																		.	.	.	.											.
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.		.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.					.	.	.	.	.	.	.	.	440	.
		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.				.	.	.	.	.	.	.	.	610	.	.			.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.
Predicted Secondary structure																																													.	.	.												.	.
Query SS confidence																																													.	.	.												.	.
Query Sequence		E	S	G	R	V	M	L	V	D	A	L	T	R	S	M	N	V	P	T	V	N	L	G	M	A	L	G	L	P	A	V	T	E	T	W	I	K	L	G	V	P	K	D	.	.	.	Q	L	H	P	V	P	A	M	L	L	G	.	.	A	L	N	L	T	P	I	E	V	A	Q	A	F	Q	T	I	A	S	G	G	N
Query Conservation																																													.	.	.												.	.
Alig confidence		.																																											.	.	.												.	.
Template Conservation		.
Template Sequence		.	H	G	T	V	S	I	Y	D	A	L	R	Q	S	F	N	I	P	A	L	K	A	W	Q	S	V	K	Q	N	A	G	N	D	A	P	K	K	F	A	A	K	L	G	L	N	Y	E	G	D	I	G	P	S	E	V	L	G	G	S	A	S	E	F	S	P	T	Q	L	A	S	A	F	A	A	I	A	N	G	G	T
Template Known Secondary structure		.												T	T																T		T	T									T	T				S	S								T	T		T	T																	T	T	S
Template Predicted Secondary structure		.
Template SS confidence
			442	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
		634	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680		.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.
Predicted Secondary structure																																																	.																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																	.																							.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	P	L	S	A	L	R	S	V	I	A	E	D	G	K	V	L	Y	Q	S	F	P	Q	A	E	R	A	V	P	A	Q	A	A	Y	L	T	L	W	T	M	Q	Q	V	V	Q	R	.	G	T	G	R	Q	L	G	A	K	Y	P	N	L	H	L	A	G	K	T	G	T	T	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																	.																							.	.	.	.	.	.	.	.	.	.
Alig confidence																							.																										.					.	.																	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.																															.	.
Template Sequence		Y	N	N	A	H	S	I	Q	K	V	V	T	R	D	G	E	T	I	E	Y	D	.	H	T	S	H	K	A	X	S	D	Y	T	A	Y	X	L	A	E	X	L	K	G	T	F	K	P	Y	G	S	A	Y	.	.	G	H	G	V	S	G	V	N	X	G	A	K	T	G	T	G	T	Y	G	A	E	T	Y	S	Q	Y
Template Known Secondary structure						B								T	T	S							.							S														G	G	G	S	T	T	S	T	T	T	.	.	T				S	S																				T
Template Predicted Secondary structure																							.																															.	.
Template SS confidence
		521	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.		.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.			.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.
						703	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.							.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750		.	.	.	.	.	.	.	.	.	760	.	.	.	.		.	.	.	.	.	770
Predicted Secondary structure		.	.	.	.																														.	.	.	.	.	.																				.															.
Query SS confidence		.	.	.	.																														.	.	.	.	.	.																				.															.
Query Sequence		.	.	.	.	N	N	N	V	D	T	W	F	A	G	I	D	G	S	T	V	T	I	T	W	V	G	R	D	N	N	Q	P	T	.	.	.	.	.	.	K	L	Y	G	A	S	G	A	M	S	I	Y	Q	R	Y	L	A	N	Q	.	T	P	T	P	L	N	L	V	P	P	E	D	I	A	.	D	M	G	V	D	Y
Query Conservation		.	.	.	.																														.	.	.	.	.	.																				.															.
Alig confidence		.	.	.	.																														.	.	.	.	.	.																				.															.
Template Conservation
Template Sequence		N	L	P	D	N	A	A	K	D	V	W	I	N	G	F	T	P	Q	Y	T	X	S	V	W	X	G	F	S	K	V	K	Q	Y	G	E	N	S	F	V	G	H	S	Q	Q	E	Y	P	Q	F	L	Y	E	N	V	X	S	K	I	S	S	R	D	G	E	D	F	K	R	P	S	S	V	S	G	S	I	P	S	I	N
Template Known Secondary structure		T			T	T			S									S	S										S	S			G	G	G	T	T	S			S					T														S			S								T	T			S		T	T
Template Predicted Secondary structure
Template SS confidence
		598	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.
		771	.	.	.	.	.	.	.	.	780	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	N	F	V	C	S	G	G	M	R	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	G	S	Q	D	N	N	T	T	N	R
Template Known Secondary structure			T	T				S	S	B
Template Predicted Secondary structure
Template SS confidence
		678	.	680	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions