Phyre 2 alignment of P02919 with d1m40a

Job Description P02919
Confidence 99.73% Date Thu Jan 5 10:57:35 GMT 2012

Rank 53 Aligned Residues 246

% Identity 16% Template d1m40a_

SCOP info beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase

Resolution 0.85

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	S	V	A	Q	D	A	A	E	K	A	A	V	E	G	I	P	A	L	K	K	Q	R	K	L	S	D	L	E	T	A	I	V	V	V	D	R	F	S	G	E	V	R	A	M	V	G	G	S	E	P	Q	F	A	G	Y	N	R	A	M	Q	A	R	R	S	I	G	S	L	A	K	P	A	T	Y	L	T	A	L	S
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	H	P	E	T	L	V	K	V	K	D	A	E	D	Q	L	G	A	R	.	.	.	.	.	.	.	.	.	.	.	V	G	Y	I	E	L	D	L	N	S	G	K	I	L	E	S	F	R	P	.	.	.	.	.	.	.	.	.	.	.	.	E	E	R	F	P	M	M	S	T	F	K	V	L	L	C	G	A	V	L	S
Template Known Secondary structure																T	S		.	.	.	.	.	.	.	.	.	.	.								T	T	T								S	T	.	.	.	.	.	.	.	.	.	.	.	.	T	S					G	G	G
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.												.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.													.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.

	523				.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.					.	.	.	.	.	.	.	.	580	.	.	.	.		.	.	.	.	.	590	.	.	.	.
Predicted Secondary structure		.	.	.																																																	.	.	.	.														.
Query SS confidence		.	.	.																																																	.	.	.	.														.
Query Sequence	Q	.	.	.	P	K	I	Y	R	L	N	T	W	I	A	D	A	P	I	A	L	R	Q	P	N	G	Q	V	W	S	P	Q	N	D	D	R	R	Y	S	E	S	G	R	V	M	L	V	D	A	L	T	R	.	.	.	.	S	M	N	V	P	T	V	N	L	G	M	A	L	.	G	L	P	A	V	T	E	T	W	I
Query Conservation		.	.	.																																																	.	.	.	.														.
Alig confidence		.	.	.				.																					.	.	.	.	.	.	.	.																	.	.	.	.														.
Template Conservation								.																					.	.	.	.	.	.	.	.
Template Sequence	R	V	D	A	G	Q	E	.	Q	L	G	R	R	I	H	Y	S	Q	N	D	L	V	E	Y	S	P	V	T	.	.	.	.	.	.	.	.	E	K	H	L	T	D	G	M	T	V	R	E	L	C	S	A	A	I	T	M	S	D	N	T	A	A	N	L	L	L	T	T	I	G	G	P	K	E	L	T	A	F	L	H
Template Known Secondary structure				T	T	S		.		T	T							G	G	G			S			T	T	G	.	.	.	.	.	.	.	.	G	G		T	T	T														S														T	S
Template Predicted Secondary structure								.																					.	.	.	.	.	.	.	.
Template SS confidence
	83	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.									110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.

	595	.	.	.	.	600	.	.	.	.							.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.
Query Sequence	K	L	G	V	P	K	D	Q	L	H	.	.	.	.	.	.	P	V	P	A	M	L	L	G	A	L	N	L	T	P	I	E	V	A	Q	A	F	Q	T	I	A	S	G	G	N	R	A	P	L	S	A	L	R	S	V	I	A	E	D	G	K	V	L	Y	Q	S	F	P	Q	A	E	R	A	V	P	A	Q	A	A	Y
Query Conservation											.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	N	M	G	D	H	V	T	R	L	D	R	W	E	P	E	L	N	E	A	I	P	N	D	E	R	D	T	T	T	P	A	A	M	A	T	T	L	R	K	L	L	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	L	T	L	A	S	R	Q
Template Known Secondary structure		T	T		S	S							T	T	G	G	G				T	T			T	T																	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S
Template Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.																													.	.	.	200	.	.	.	.	.

	669	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.			.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence	L	T	L	W	T	M	Q	Q	V	V	Q	R	G	T	G	R	Q	L	G	A	K	Y	P	N	L	H	L	A	G	K	T	G	T	T	N	N	N	.	.	V	D	T	W	F	A	G	I	D	G	S	T	V	T	I	T	W	V	G	R	D	N	N	Q	P	T	K	L	Y	G	A	S	G	A	M	S	I	Y	Q	R	Y
Query Conservation																																						.	.
Alig confidence																			.																			.	.
Template Conservation																			.
Template Sequence	Q	L	I	D	W	M	E	A	D	K	V	A	G	P	L	L	R	S	.	A	L	P	A	G	W	F	I	A	D	K	S	G	A	G	E	R	G	S	R	G	I	I	A	A	L	G	P	D	G	K	P	S	R	I	V	V	I	Y	T	T	G	S	Q	A	T	M	D	E	R	N	R	Q	I	A	E	I	G	A	S	L
Template Known Secondary structure										S	S		T	T	T	G	G	G	.	G			T	T											S	T	T										S	T	T												S
Template Predicted Secondary structure																			.
Template SS confidence
	206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

	747	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	A	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence	I	K	H
Template Known Secondary structure			T
Template Predicted Secondary structure
Template SS confidence
	287	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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