Return to main results Retrieve Phyre Job Id

Job DescriptionP02919
Confidence99.88%DateThu Jan 5 10:57:35 GMT 2012
Rank36Aligned Residues249
% Identity16%Templated1dy6a_
SCOP infobeta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase
Resolution2.1

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   451........460.........470.........480.........490.........500.........510......... 520.......
Predicted Secondary structure 





























...




Query SS confidence 




































































. . .







Query Sequence  EKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLT. . . ALSQPKIY
Query Conservation 
 

   
  
        



 




 









 
      


  
 








 



...


 
   
Alig confidence 

















...



















.............














...





.
Template Conservation     
   
          ... 

 
 
  

     
   .............    

  
   
         
 . 
Template Sequence  SDAAAKQIKKLEEDFDGR. . . IGVFAIDTGSGNTFGYRSDE. . . . . . . . . . . . . RFPLCSSFKGFLAAAVLERVQQKK. L
Template Known Secondary structure  TT...TTT

STTS.............

GGGGTTS.S
Template Predicted Secondary structure 


...








.............







.
Template SS confidence 















































































   26...30.........40... ......50.........60... ......70.........80....... .
 
   528.530.........540.........550.........560.........570.........580..... ....590.........600....
Predicted Secondary structure 



























..








.
Query SS confidence 

























































. .


















.
Query Sequence  RLNTWIADAPIALRQPNGQVWSPQNDDRRYSESGRVMLVDALTRSMNVPTVNLGMALG. . LPAVTETWIKLGVPKDQLH.
Query Conservation 
  
 
 
 
       
  
 
 


      
 


  


 
 

  
 
   

.. 
 
      


      .
Alig confidence 

















..










..
























..


















.
Template Conservation       
            ..      
   
..   
    
  
 
 

  
    

            
        
Template Sequence  DINQKVKYESRDLEYHSP. . ITTKYKGSGMT. . LGDMASAALQYSDNGATNIIMERFLGGPEGMTKFMRSIGDNEFRLDR
Template Known Secondary structure 
TT


TT



S

..TTTT
..S

TS
TT
SS



S
Template Predicted Secondary structure 










..










..















Template SS confidence 















































































   90.........100....... ..110........ .120.........130.........140.........150.........160.....
 
   605....610.........620.........630.........640.........650.........660.........670.........
Predicted Secondary structure  .....





























Query SS confidence  . . . . .










































































Query Sequence  . . . . . PVPAMLLGALNLTPIEVAQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQ
Query Conservation  .....  





   






 








    
  
  
 
  
 

         


   
  
   
  

 
Alig confidence  .....


























............................



















Template Conservation                   

 
   

  
   ............................              
     
Template Sequence  WELELNTAIPGDKRDTSTPKAVANSLNKLALG. . . . . . . . . . . . . . . . . . . . . . . . . . . . NVLNAKVKAIYQNWLKGNTT
Template Known Secondary structure 
TTGGGG

TT

TT
TS............................SSS
T
SS
Template Predicted Secondary structure 















............................







Template SS confidence 















































































   165....170.........180.........190...... ...200.........210......
 
   680.........690.........700.........710... ......720.........730.........740.........750.
Predicted Secondary structure 















.....

















Query SS confidence 

































. . . . .





































Query Sequence  RGTGRQLGAKYPNLHLAGKTGTTNNNVDTWFAGI. . . . . DGSTVTITWVGRDNNQPTKLYGASGAMSIYQRYLANQT
Query Conservation   


           







 
 







.....

  
  



 

      

   




   
  
 
Alig confidence 






.

























.....

















..

















Template Conservation         .       
  



          
 
         
 

         ..     
  
   
   
 
Template Sequence  GDARIRA. SVPADWVVGDKTGSCGAYGTANDYAVIWPKNRAPLIVSIYTTRKSKDDK. . HSDKTIAEASRIAIQAID
Template Known Secondary structure 
TTTGGG.GS
TTS
SSTT

TTS

SSTT

..

T
Template Predicted Secondary structure 




.



























..
Template SS confidence 












































































   217..220... ......230.........240.........250.........260.........270.. .......280.........290
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions