Job Description P02919 Confidence 100.00% Date Thu Jan 5 10:57:35 GMT 2012 Rank 17 Aligned Residues 285 % Identity 26% Template c3oc2A_ PDB info PDB header:penicillin-binding protein Chain: A: PDB Molecule:penicillin-binding protein 3; PDBTitle: crystal structure of penicillin-binding protein 3 from pseudomonas2 aeruginosa Resolution 1.97 Å

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		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.										.	500	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.
Query Sequence		L	S	G	V	K	I	F	T	T	F	D	S	V	A	Q	D	A	A	E	K	A	A	V	E	G	I	P	A	L	K	K	Q	R	K	L	S	D	L	E	T	A	I	V	V	V	D	R	F	S	G	E	V	R	A	M	V	G	G	S	E	P	Q	F	A	G	Y	.	.	.	.	.	.	.	.	.	N	R	A	M	Q
Query Conservation																																																																				.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.
Template Sequence		K	P	G	K	T	L	A	L	S	I	D	L	R	L	Q	Y	L	A	H	R	E	L	R	N	A	L	L	E	N	G	A	K	A	.	.	.	.	.	.	G	S	L	V	I	M	D	V	K	T	G	E	I	L	A	M	T	N	Q	P	T	Y	N	P	N	N	R	R	N	L	Q	P	A	A	M	R	N	R	A	M	I
Template Known Secondary structure		B							B	S																					T				.	.	.	.	.	.								T	T	T		B								S				T	T			T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.							.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	R	S	I	G	S	L	A	K	P	A	T	Y	L	T	A	L	S	Q	P	K	I	Y	R	L	N	T	W	I	A	D	A	P	I	A	L	R	Q	P	N	G	Q	V	W	S	P	Q	N	D	D	R	R	Y	S	E	S	G	R	V	M	L	V	D	A	L	T	R	S	M	N	V	P	T	V	N	L	G	M	A
Query Conservation
Alig confidence																								.																			.	.	.											.	.	.
Template Conservation																								.																			.	.	.											.	.	.
Template Sequence		D	V	F	E	P	G	S	T	V	K	P	F	S	M	S	A	A	L	A	S	G	R	.	W	K	P	S	D	I	V	D	V	Y	P	G	T	L	Q	I	G	R	.	.	.	Y	T	I	R	D	V	S	R	N	S	.	.	.	R	Q	L	D	L	T	G	I	L	I	K	S	S	N	V	G	I	S	K	I	A	F	D
Template Known Secondary structure				B	B		G	G	G	G											T	T	S	.			T	T						T	T	S					T	T	.	.	.						S					.	.	.	S										T	T
Template Predicted Secondary structure																								.																			.	.	.											.	.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.				.	.	330	.	.	.	.	.	.	.				.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		584	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.																						.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	L	P	A	V	T	E	T	W	I	K	L	G	V	P	K	D	Q	L	H	P	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	M	L	L	G	A	L	N	L	T	P	I	E	V	A	Q	A	F	Q	T	I	A	S	G	G	N	R	A	P	L	S	A	L	R	S
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						.
Template Conservation																																																				.
Template Sequence		I	G	A	E	S	I	Y	S	V	M	Q	Q	V	G	L	G	Q	D	T	G	L	G	F	P	G	E	R	V	G	N	L	P	N	H	R	K	W	P	K	A	E	T	A	T	L	A	Y	G	Y	G	.	L	S	V	T	A	I	Q	L	A	H	A	Y	A	A	L	A	N	D	G	K	S	V	P	L	S	M	T	R	V
Template Known Secondary structure														T	T	T	T	S					S		T	T					B					S	S											T	T		S	.		B	B														T	T	T						B	S	B
Template Predicted Secondary structure																																																				.
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
		643	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.		680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.					.	.	.	.
Predicted Secondary structure																																							.																																			.	.	.	.
Query SS confidence																																							.																																			.	.	.	.
Query Sequence		V	I	A	E	D	G	K	V	L	Y	Q	S	F	P	Q	A	E	R	A	V	P	A	Q	A	A	Y	L	T	L	W	T	M	Q	Q	V	V	Q	.	R	G	T	G	R	Q	L	G	A	K	Y	P	N	L	H	L	A	G	K	T	G	T	T	N	N	N	V	D	T	W	F	A	G	I	.	.	.	.	D	G	S	T
Query Conservation																																							.																																			.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.																					.						.	.																												.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.																											.	.
Template Sequence		D	R	V	P	D	G	V	.	.	.	.	.	.	.	.	.	.	Q	V	I	S	P	E	V	A	S	T	V	Q	G	M	L	Q	Q	V	V	E	A	Q	G	G	V	F	.	.	R	A	Q	V	P	G	Y	H	A	A	G	K	S	G	T	A	R	K	A	Y	R	S	L	F	A	G	F	A	P	A	T	D	P	R	I
Template Known Secondary structure		S	S						.	.	.	.	.	.	.	.	.	.			S																		S	T	T	S		G	.	.	G	G			T	T	S																							T	T	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.																											.	.
Template SS confidence
		440	.	.	.	.	.	.											.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.			.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
		718	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	I	T	W	V	G	R	D	N	N	Q	P	T	K	L	Y	G	A	S	G	A	M	S	I	Y	Q	R	Y	L	A	N	Q
Query Conservation
Alig confidence											.	.	.	.	.	.	.
Template Conservation											.	.	.	.	.	.	.
Template Sequence		A	M	V	V	V	I	D	E	P	.	.	.	.	.	.	.	F	G	G	L	V	S	A	P	V	F	S	K	V	M	A	G	A
Template Known Secondary structure											.	.	.	.	.	.	.						T
Template Predicted Secondary structure											.	.	.	.	.	.	.
Template SS confidence
		517	.	.	520	.	.	.	.	.								.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions