Job Description P02919 Confidence 98.73% Date Thu Jan 5 10:57:35 GMT 2012 Rank 69 Aligned Residues 204 % Identity 22% Template c3mfdB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:d-alanyl-d-alanine carboxypeptidase dacb; PDBTitle: the structure of the beta-lactamase superfamily domain of d-alanyl-d-2 alanine carboxypeptidase from bacillus subtilis Resolution 1.75 Å

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		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	V	V	V	D	R	F	S	G	E	V	R	A	M	V	G	G	S	E	P	Q	F	A	G	Y	N	R	A	M	Q	A	R	R	S	I	G	S	L	A	K	P	A	T	Y	L	T	A	L	S	Q	P	K	I	Y	R	L	N	T	W	I	A	D	A	P	I	A	L	R	Q	P	N	G	Q	V	W	S	P	Q	N
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.											.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.											.	.	.
Template Sequence		S	A	I	I	I	D	G	A	S	G	R	V	L	Y	A	K	D	E	.	.	.	.	.	.	.	.	.	.	.	.	H	Q	K	R	R	I	A	S	I	T	K	I	X	T	A	V	L	A	I	E	S	G	K	X	.	.	.	.	.	.	.	.	D	Q	T	V	T	V	S	A	N	A	.	.	.	V	R	T	E	G
Template Known Secondary structure								T	T	T								S	T	.	.	.	.	.	.	.	.	.	.	.	.	T			B			G	G	G	G											T	T		T	.	.	.	.	.	.	.	.	T	S									.	.	.		T			S
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.											.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.													.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.									.	.	.	80	.	.	.	.	.	.				.	.	.	90	.
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.					.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.							.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.		.	.	.	.	.	.	.	.	620	.
Predicted Secondary structure																	.	.	.	.																			.	.	.	.	.	.																											.
Query SS confidence																	.	.	.	.																			.	.	.	.	.	.																											.
Query Sequence		D	D	R	R	Y	S	E	S	G	R	V	M	L	V	D	.	.	.	.	A	L	T	R	S	M	N	V	P	T	V	N	L	G	M	A	L	G	.	.	.	.	.	.	L	P	A	V	T	E	T	W	I	K	L	G	V	P	K	D	Q	L	H	P	V	P	A	M	L	L	.	G	A	L	N	L	T	P	I	E	V
Query Conservation																	.	.	.	.																			.	.	.	.	.	.																											.
Alig confidence																	.	.	.	.																			.	.	.	.	.	.																											.
Template Conservation
Template Sequence		S	A	I	Y	L	T	E	G	Q	K	V	K	L	K	D	L	V	Y	G	L	X	L	R	S	G	N	D	A	A	V	A	I	A	E	H	V	G	G	S	L	D	G	F	V	Y	X	X	N	Q	K	A	E	Q	L	G	X	K	N	T	R	F	Q	N	P	H	G	L	D	D	H	E	N	H	Y	S	T	A	Y	D	X
Template Known Secondary structure		S						T	T																														S	S																T		T	T		B		S	S	S	S			S		S	S	S		B	B
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		622	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Q	A	F	Q	T	I	A	S	G	G	N	R	A	P	L	S	A	L	R	S	V	I	A	E	D	G	K	V	L	Y	Q	S	F	P	Q	A	E	R	A	V	P	A	Q	A	A	Y	L	T	L	W	T	M	Q	Q	V	V	Q	R	G	T	G	R	Q	L	G	A	K	Y	P	N	L	H	L	A	G	K	T	G	T
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Sequence		A	I	L	T	K	Y	A	X	K	L	K	D	Y	Q	K	I	S	G	T	K	I	Y	K	A	E	T	X	E	S	V	W	K	N	K	N	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	X	L	Y	P	Y	S	.	T	G	G	K	T	G	Y
Template Known Secondary structure									T	T	S								T		S					S	S	S	S						S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T		T	T		.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.																												.	210	.	.	.	.	.	.		.	.	.	220	.	.	.
		702	.	.	.	.	.	.	.	710	.	.	.			.	.	.	.	.	.	720	.	.	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence		T	N	N	N	V	D	T	W	F	A	G	I	.	.	D	G	S	T	V	T	I	T	W	V	G	R	D	N
Query Conservation														.	.
Alig confidence														.	.
Template Conservation
Template Sequence		T	K	L	A	K	R	T	L	V	S	T	A	S	K	D	G	I	D	L	I	A	V	T	I	N	D	P	N
Template Known Secondary structure			T	T	T											T	T									S		T	T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions