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Job DescriptionP02919
Confidence98.73%DateThu Jan 5 10:57:35 GMT 2012
Rank69Aligned Residues204
% Identity22%Templatec3mfdB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:d-alanyl-d-alanine carboxypeptidase dacb; PDBTitle: the structure of the beta-lactamase superfamily domain of d-alanyl-d-2 alanine carboxypeptidase from bacillus subtilis
Resolution1.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   473......480.........490.........500.........510.........520.........530.........540.........550..
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Query Sequence  AIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSIGSLAKPATYLTALSQPKIYRLNTWIADAPIALRQPNGQVWSPQN
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Template Sequence  SAIIIDGASGRVLYAKDE. . . . . . . . . . . . HQKRRIASITKIXTAVLAIESGKX. . . . . . . . DQTVTVSANA. . . VRTEG
Template Known Secondary structure  TTT

ST............T

B

GGGGTT
T........TS

...T

S
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   35....40.........50.. .......60.........70...... ...80...... ...90.
 
   553......560....... ..570.........580..... ....590.........600.........610. ........620.
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Query Sequence  DDRRYSESGRVMLVD. . . . ALTRSMNVPTVNLGMALG. . . . . . LPAVTETWIKLGVPKDQLHPVPAMLL. GALNLTPIEV
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Template Sequence  SAIYLTEGQKVKLKDLVYGLXLRSGNDAAVAIAEHVGGSLDGFVYXXNQKAEQLGXKNTRFQNPHGLDDHENHYSTAYDX
Template Known Secondary structure  S




TT


SST
TT
B
SSSS

S
SSS
BB
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   92.......100.........110.........120.........130.........140.........150.........160.........170.
 
   622.......630.........640.........650.........660.........670.........680.........690.........700.
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Query Sequence  AQAFQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLGAKYPNLHLAGKTGT
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Template Sequence  AILTKYAXKLKDYQKISGTKIYKAETXESVWKNKNKL. . . . . . . . . . . . . . . . . . . . . . . . . . . LTXLYPYS. TGGKTGY
Template Known Secondary structure  TTST
S
SSSS

S
...........................TT
TT.
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   172.......180.........190.........200........ .210...... ...220...
 
   702.......710... ......720.......
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Query Sequence  TNNNVDTWFAGI. . DGSTVTITWVGRDN
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Template Sequence  TKLAKRTLVSTASKDGIDLIAVTINDPN
Template Known Secondary structure  TTTTTS
TT
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   224.....230.........240.........250.
 
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No model constructed - rank, confidence too low




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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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