Job Description P02919 Confidence 100.00% Date Thu Jan 5 10:57:35 GMT 2012 Rank 12 Aligned Residues 308 % Identity 24% Template c3lo7A_ PDB info PDB header:transferase Chain: A: PDB Molecule:penicillin-binding protein a; PDBTitle: crystal structure of pbpa from mycobacterium tuberculosis Resolution 2.05 Å

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		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		V	R	Q	E	L	Q	A	K	L	G	D	K	V	K	D	L	S	G	V	K	I	F	T	T	F	D	S	V	A	Q	D	A	A	E	K	A	A	V	E	G	I	P	A	L	K	K	Q	R	K	L	S	D	L	E	T	A	I	V	V	V	D	R	F	S	G	E	V	R	A	M	V	G	G	S	E	P	Q	F	A	.
Query Conservation																																																																																	.
Alig confidence																																											.	.	.	.	.	.	.	.																															.
Template Conservation																																											.	.	.	.	.	.	.	.
Template Sequence		L	E	R	A	E	D	P	I	L	N	G	S	D	R	R	L	R	G	G	N	V	D	T	T	I	N	P	R	I	Q	Q	A	G	W	D	A	M	Q	Q	G	C	.	.	.	.	.	.	.	.	Y	G	P	C	K	G	A	V	V	A	L	E	P	S	T	G	K	I	L	A	L	V	S	S	P	S	Y	D	P	N	L
Template Known Secondary structure						T						T			T	T																									B	T	.	.	.	.	.	.	.	.	T	B											T	T	T		B								S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140									.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
																									497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	N	R	A	M	Q	A	R	R	S	I	G	S	L	A	K	P	A	T	Y	L	T	A	L	S	Q	P	K	I	Y	R	L	N	T	W	I	A	D	A	P	I	A	L	R	Q	P	N	G	Q	V	W	S	P	Q	N	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.											.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.											.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	S	H	N	P	E	V	Q	A	Q	A	W	Q	R	L	G	D	N	P	A	S	P	L	T	N	R	A	I	S	E	T	Y	P	P	G	S	T	F	K	V	I	T	T	A	A	A	L	A	A	G	A	T	.	E	T	E	Q	L	T	A	A	P	T	.	.	.	.	.	.	.	.	.	.	I	P	L	E	N	Y
Template Known Secondary structure			T		S																T	T		T	T	S		T	T	T	S			B			G	G	G	G											T	T			.	T	T							S	B	.	.	.	.	.	.	.	.	.	.				B
Template Predicted Secondary structure																																																							.											.	.	.	.	.	.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.											.	250	.	.	.	.
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.				600	.	.	.	.	.	.	.																	.	.	610	.	.	.	.
Predicted Secondary structure																																																.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	R	R	Y	S	E	S	G	R	V	M	L	V	D	A	L	T	R	S	M	N	V	P	T	V	N	L	G	M	A	L	G	L	P	A	V	T	E	T	W	I	K	L	G	V	P	.	.	.	K	D	Q	L	H	P	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	M	L	L	G	A	L
Query Conservation																																																.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.																																									.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.
Template Sequence		P	C	G	D	.	.	E	P	T	V	S	L	R	E	A	F	V	K	S	C	N	T	A	F	V	Q	L	G	I	R	T	G	A	D	A	L	R	S	M	A	R	A	F	G	L	D	S	P	P	R	P	T	P	L	Q	V	A	E	S	T	V	G	P	I	P	D	S	A	A	L	G	M	T	S	I	G	Q	K	D	V
Template Known Secondary structure				S	S	.	.	S	S										T	T																								T	T	T	T	S					S	S	S						B						S								T	T	T		T	T
Template Predicted Secondary structure						.	.
Template SS confidence
		265	.	.	.			.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		615	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.		.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		N	L	T	P	I	E	V	A	Q	A	F	Q	T	I	A	S	G	G	N	R	A	P	L	S	A	L	R	S	V	I	A	E	D	G	K	V	L	Y	Q	S	F	P	.	Q	A	E	R	A	V	P	A	Q	A	A	Y	L	T	L	W	T	M	Q	Q	V	V	Q	R	G	T	G	R	Q	L	G	A	K	Y	P	N	L
Query Conservation																																												.
Alig confidence																																												.																													.	.	.
Template Conservation																																																																									.	.	.
Template Sequence		A	L	T	P	L	A	N	A	E	I	A	A	T	I	A	N	G	G	I	T	M	R	P	Y	L	V	G	S	L	K	G	P	D	L	A	N	I	S	T	T	V	G	Y	Q	Q	R	R	A	V	S	P	Q	V	A	A	K	L	T	E	L	M	V	G	A	E	K	V	A	Q	Q	K	.	.	.	G	A	I	P	G	V
Template Known Secondary structure		B	B														T	T	T						B	S							T	T																S																			S			T	.	.	.	T			T	T
Template Predicted Secondary structure																																																																									.	.	.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.				.	.	.	.	.	.
		694	.	.	.	.	.	700	.	.	.	.	.	.	.								.	.	710	.	.	.	.					.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750
Predicted Secondary structure																.	.	.	.	.	.	.								.	.	.	.
Query SS confidence																.	.	.	.	.	.	.								.	.	.	.
Query Sequence		H	L	A	G	K	T	G	T	T	N	N	N	V	D	.	.	.	.	.	.	.	T	W	F	A	G	I	D	.	.	.	.	G	S	T	V	T	I	T	W	V	G	R	D	N	N	Q	P	T	K	L	Y	G	A	S	G	A	M	S	I	Y	Q	R	Y	L	A	N	Q
Query Conservation																.	.	.	.	.	.	.								.	.	.	.
Alig confidence																.	.	.	.	.	.	.								.	.	.	.																		.
Template Conservation																																																			.
Template Sequence		Q	I	A	S	K	T	G	T	A	E	H	G	T	D	P	R	H	T	P	P	H	A	W	Y	I	A	F	A	P	A	Q	A	P	K	V	A	V	A	V	L	V	E	N	G	A	D	R	L	S	.	A	T	G	G	A	L	A	A	P	I	G	R	A	V	I	E	A	A
Template Known Secondary structure													S	S		T	T	T	S											S	T	T	S										T	T				S	S	S	.	S	S	S		T	T
Template Predicted Secondary structure																																																			.
Template SS confidence
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.		.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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