Job Description P02919 Confidence 100.00% Date Thu Jan 5 10:57:35 GMT 2012 Rank 1 Aligned Residues 707 % Identity 97% Template c3fwlA_ PDB info PDB header:transferase, hydrolase Chain: A: PDB Molecule:penicillin-binding protein 1b; PDBTitle: crystal structure of the full-length transglycosylase pbp1b2 from escherichia coli Resolution 3.09 Å

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		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	W	L	L	L	K	L	A	I	V	F	A	V	L	I	A	I	Y	G	V	Y	L	D	Q	K	I	R	S	R	I	D	G	K	V	W	Q	L	P	A	A	V	Y	G	R	M	V	N	L	E	P	D	M	T	I	S	K	N	E	M	V	K	L	L	E	A	T	Q	Y	R	Q	V	S	K	M	T	R	P	G	E	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	W	L	L	L	K	L	A	I	V	F	A	V	L	I	A	I	Y	G	V	Y	L	D	Q	K	I	R	S	R	I	D	G	K	V	W	Q	L	P	A	A	V	Y	G	R	X	V	N	L	E	P	D	X	T	I	S	K	N	E	X	V	K	L	L	E	A	T	Q	Y	R	Q	V	S	K	X	T	R	P	G	E	F
Template Known Secondary structure					T	T	T	T					T	T	T								T	T	T	T	T					S	S																		T	T															T	T					S	S			S	T	T
Template Predicted Secondary structure
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	Q	A	N	S	I	E	M	I	R	R	P	F	D	F	P	D	S	K	E	G	Q	V	R	A	R	L	T	F	D	G	D	H	L	A	T	I	V	N	M	E	N	N	R	Q	F	G	F	F	R	L	D	P	R	L	I	T	M	I	S	S	P	N	G	E	Q	R	L	F	V	P	R	S	G	F	P	D	L	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	V	Q	A	N	S	I	E	X	I	R	R	P	F	D	F	P	D	S	K	E	G	Q	V	R	A	R	L	T	F	D	G	D	H	L	A	T	I	V	N	X	E	N	N	R	Q	F	G	F	F	R	L	D	P	R	L	I	T	X	I	S	S	P	N	G	E	Q	R	L	F	V	P	R	S	G	F	P	D	L	L
Template Known Secondary structure					S	S												S	S	S													T	T								T	T	T	T				S	S														T	T	S								G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	T	L	L	A	T	E	D	R	H	F	Y	E	H	D	G	I	S	L	Y	S	I	G	R	A	V	L	A	N	L	T	A	G	R	T	V	Q	G	A	S	T	L	T	Q	Q	L	V	K	N	L	F	L	S	S	E	R	S	Y	W	R	K	A	N	E	A	Y	M	A	L	I	M	D	A	R	Y	S	K	D	R
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	D	T	L	L	A	T	E	D	R	H	F	Y	E	H	D	G	I	S	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	L	T	Q	Q	L	V	K	N	L	F	L	S	S	E	R	S	Y	W	R	K	A	N	E	A	Y	X	A	L	I	X	D	A	R	Y	S	K	D	R
Template Known Secondary structure							T	T	S				S	S	S		G	G	G				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							T	T							S	S		S	S																T	S		T	T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.																				.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	E	L	Y	M	N	E	V	Y	L	G	Q	S	G	D	N	E	I	R	G	F	P	L	A	S	L	Y	Y	F	G	R	P	V	E	E	L	S	L	D	Q	Q	A	L	L	V	G	M	V	K	G	A	S	I	Y	N	P	W	R	N	P	K	L	A	L	E	R	R	N	L	V	L	R	L	L	Q	Q	Q	Q	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	E	L	Y	X	N	E	V	Y	L	G	Q	S	G	D	N	E	I	R	G	F	P	L	A	S	L	Y	Y	F	G	R	P	V	E	E	L	S	L	D	Q	Q	A	L	L	V	G	X	V	K	G	A	S	I	Y	N	P	W	R	N	P	K	L	A	L	E	R	R	N	L	V	L	R	L	L	Q	Q	Q	Q	I
Template Known Secondary structure							T	T	T						S	S	S	S				S											S		G	G	G													T	T							S	S	S	S													S		S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.
		386	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	Q	E	L	Y	D	M	L	S	A	R	P	L	G	V	Q	P	R	G	G	V	I	S	P	Q	P	A	F	M	Q	L	V	R	Q	E	L	Q	A	K	L	G	D	K	V	K	D	L	S	G	V	K	I	F	T	T	F	D	S	V	A	Q	D	A	A	E	K	A	A	V	E	G	I	P	A	L	K	K	Q	R
Query Conservation
Alig confidence																.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.
Template Sequence		I	D	Q	E	L	Y	D	X	L	S	A	R	P	V	.	.	.	.	.	.	.	.	I	S	P	Q	P	A	F	X	Q	L	V	R	Q	E	L	Q	A	K	L	G	D	K	V	K	D	L	S	G	V	K	I	F	T	T	F	D	S	V	A	Q	D	A	A	E	K	A	A	V	E	G	I	P	A	L	K	K	Q	R
Template Known Secondary structure		S	S	S	T	T	S									.	.	.	.	.	.	.	.		S	S																		S	T	T	T	T		S	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.	.	.									400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	S	D	L	E	T	A	I	V	V	V	D	R	F	S	G	E	V	R	A	M	V	G	G	S	E	P	Q	F	A	G	Y	N	R	A	M	Q	A	R	R	S	I	G	S	L	A	K	P	A	T	Y	L	T	A	L	S	Q	P	K	I	Y	R	L	N	T	W	I	A	D	A	P	I	A	L	R	Q	P	N	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	S	D	L	E	T	A	I	V	V	V	D	R	F	S	G	E	V	R	A	X	V	G	G	S	E	P	Q	F	A	G	Y	N	R	A	X	Q	A	R	R	S	I	G	S	L	A	K	P	A	T	Y	L	T	A	L	S	Q	P	K	I	Y	R	L	N	T	W	I	A	D	A	P	I	A	L	R	Q	P	N	G
Template Known Secondary structure				S											T	T	T		B							S	S	S	S	T	T		S	S		T	T	T	S						G	G	G	G										T	S		S	S			T	T													S	S	S
Template Predicted Secondary structure
Template SS confidence
		466	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	W	S	P	Q	N	D	D	R	R	Y	S	E	S	G	R	V	M	L	V	D	A	L	T	R	S	M	N	V	P	T	V	N	L	G	M	A	L	G	L	P	A	V	T	E	T	W	I	K	L	G	V	P	K	D	Q	L	H	P	V	P	A	M	L	L	G	A	L	N	L	T	P	I	E	V	A	Q	A	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	V	W	S	P	Q	N	D	D	R	R	Y	S	E	S	G	R	V	X	L	V	D	A	L	T	R	S	X	N	V	P	T	V	N	L	G	X	A	L	G	L	P	A	V	T	E	T	W	I	K	L	G	V	P	K	D	Q	L	H	P	V	P	A	X	L	L	G	A	L	N	L	T	P	I	E	V	A	Q	A	F
Template Known Secondary structure									T	T					T	T	S										T	T		S																							T			G	G	G				S	T					T
Template Predicted Secondary structure
Template SS confidence
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.
		626	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	I	A	S	G	G	N	R	A	P	L	S	A	L	R	S	V	I	A	E	D	G	K	V	L	Y	Q	S	F	P	Q	A	E	R	A	V	P	A	Q	A	A	Y	L	T	L	W	T	M	Q	Q	V	V	Q	R	G	T	G	R	Q	L	G	A	K	Y	P	N	L	H	L	A	G	K	T	G	T	T	N	N	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	T	I	A	S	G	G	N	R	A	P	L	S	A	L	R	S	V	I	A	E	D	G	K	V	L	Y	Q	S	F	P	Q	A	E	R	A	V	P	A	Q	A	A	Y	L	T	L	W	T	X	Q	Q	V	V	Q	R	G	T	G	R	Q	L	G	A	K	Y	P	N	L	H	L	A	G	K	T	G	T	T	N	N	N
Template Known Secondary structure						T	T	S						B	S							S	S	S														S																		T	S	T	T								T	T	S										G	G	G
Template Predicted Secondary structure
Template SS confidence
		626	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.
		706	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	T	W	F	A	G	I	D	G	S	T	V	T	I	T	W	V	G	R	D	N	N	Q	P	T	K	L	Y	G	A	S	G	A	M	S	I	Y	Q	R	Y	L	A	N	Q	T	P	T	P	L	N	L	V	P	P	E	D	I	A	D	M	G	V	D	Y	D	G	N	F	V	C	S	G	G	M	R	I	L	P	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D	T	W	F	A	G	I	D	G	S	T	V	T	I	T	W	V	G	R	D	N	N	Q	P	T	K	L	Y	G	A	S	G	A	X	S	I	Y	Q	R	Y	L	A	N	Q	T	P	T	P	L	N	L	V	P	P	E	D	I	A	D	X	G	V	D	Y	D	G	N	F	V	C	S	G	G	X	R	I	L	P	V
Template Known Secondary structure		S									S	S										T	T								T	T														S											T	T								S	S					S	S			S
Template Predicted Secondary structure
Template SS confidence
		706	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.
		786	.	.	.	790	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	T	S	D	P	Q	S	L	C	Q	Q	S	E	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	T	S	D	P	Q	S	L	C	Q	Q	S	E	X
Template Known Secondary structure				S		T	T					T	T	T
Template Predicted Secondary structure
Template SS confidence
		786	.	.	.	790	.	.	.	.	.	.	.	.	.