Job Description P02919 Confidence 100.00% Date Thu Jan 5 10:57:35 GMT 2012 Rank 19 Aligned Residues 297 % Identity 21% Template c3equB_ PDB info PDB header:biosynthetic protein Chain: B: PDB Molecule:penicillin-binding protein 2; PDBTitle: crystal structure of penicillin-binding protein 2 from neisseria2 gonorrhoeae Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.										.	500	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.
Query Sequence		L	S	G	V	K	I	F	T	T	F	D	S	V	A	Q	D	A	A	E	K	A	A	V	E	G	I	P	A	L	K	K	Q	R	K	L	S	D	L	E	T	A	I	V	V	V	D	R	F	S	G	E	V	R	A	M	V	G	G	S	E	P	Q	F	A	G	Y	.	.	.	.	.	.	.	.	.	N	R	A	M	Q
Query Conservation																																																																				.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.
Template Sequence		Q	N	G	K	D	I	I	L	S	L	D	Q	R	I	Q	T	L	A	Y	E	E	L	N	K	A	V	E	Y	H	Q	A	K	A	.	.	.	.	.	.	G	T	V	V	V	L	D	A	R	T	G	E	I	L	A	L	A	N	T	P	A	Y	D	P	N	R	P	G	R	A	D	S	E	Q	R	R	N	R	A	V	T
Template Known Secondary structure		B							B	S																				T	T		S		.	.	.	.	.	.								T	T	T		B								S				T	T	S		T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.
Template SS confidence
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.							.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	R	S	I	G	S	L	A	K	P	A	T	Y	L	T	A	L	S	Q	P	K	I	Y	R	L	N	T	W	I	A	D	A	P	I	A	L	R	Q	P	N	G	Q	V	W	S	P	Q	N	D	D	R	R	Y	S	E	S	G	R	V	M	L	V	D	A	L	T	R	S	M	N	V	P	T	V	N	L	G	M	A
Query Conservation
Alig confidence																								.															.	.	.	.	.	.	.											.	.
Template Conservation																								.															.	.	.	.	.	.	.											.	.
Template Sequence		D	X	I	E	P	G	S	A	I	K	P	F	V	I	A	K	A	L	D	A	G	K	.	T	D	L	N	E	R	L	N	T	Q	P	Y	K	I	.	.	.	.	.	.	.	G	P	S	P	V	R	D	T	H	V	.	.	Y	P	S	L	D	V	R	G	I	X	Q	K	S	S	N	V	G	T	S	K	L	S	A	R
Template Known Secondary structure				B			G	G	G	G												T	S	.	S		S	S						S					.	.	.	.	.	.	.	T	T						S	S		.	.		S											T										T	T
Template Predicted Secondary structure																								.															.	.	.	.	.	.	.											.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.								340	.	.	.	.	.	.	.	.	.			350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		584	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.																					.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	L	P	A	V	T	E	T	W	I	K	L	G	V	P	K	D	Q	L	H	P	V	P	A	M	L	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	N	L	T	P	I	E	V	A	Q	A	F	Q	T	I	A	S	G	G	N	R	A	P	L	S	A	L	R	S	V
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	A	E	E	X	Y	D	F	Y	H	E	L	G	I	G	V	R	X	H	S	G	F	P	G	E	T	A	G	L	L	R	N	W	R	R	W	R	P	I	E	Q	A	T	X	S	F	G	Y	G	L	Q	L	S	L	L	Q	L	A	R	A	Y	T	A	L	T	H	D	G	V	L	L	P	L	S	F	E	K	Q	A
Template Known Secondary structure		S												T	T	T	T	S					S		T	T									G	G	G											T	T		S			B														T	T	T						B	S	B			S
Template Predicted Secondary structure
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680		.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.		.	.	710	.	.	.	.					.	.	.
Predicted Secondary structure																																							.																												.								.	.	.	.
Query SS confidence																																							.																												.								.	.	.	.
Query Sequence		I	A	E	D	G	K	V	L	Y	Q	S	F	P	Q	A	E	R	A	V	P	A	Q	A	A	Y	L	T	L	W	T	M	Q	Q	V	V	Q	R	.	G	T	G	R	Q	L	G	A	K	Y	P	N	L	H	L	A	G	K	T	G	T	T	N	N	N	V	D	.	T	W	F	A	G	I	D	.	.	.	.	G	S	T
Query Conservation																																							.																												.								.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.																						.					.	.																						.								.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.																											.	.
Template Sequence		V	A	P	Q	G	.	.	.	.	.	.	.	.	.	.	.	K	R	I	F	K	E	T	A	R	E	V	R	N	L	X	V	S	V	T	E	P	G	G	T	G	T	.	.	A	G	A	V	D	G	F	D	V	G	A	K	T	G	T	A	R	K	N	K	H	V	A	T	F	I	G	F	A	P	A	K	N	P	R	V
Template Known Secondary structure		S					.	.	.	.	.	.	.	.	.	.	.				S													T	T	T	S	T	T	S	S		G	.	.	G	G			T	T	S																							S	T	T	S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.																											.	.
Template SS confidence
		454	.	.	.	.												.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.			.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
		718	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750		.	.	.	.	.	.	.	.	.	760
Predicted Secondary structure																																			.
Query SS confidence																																			.
Query Sequence		V	T	I	T	W	V	G	R	D	N	N	Q	P	T	K	L	Y	G	A	S	G	A	M	S	I	Y	Q	R	Y	L	A	N	Q	.	T	P	T	P	L	N	L	V	P	P
Query Conservation																																			.
Alig confidence								.	.																										.
Template Conservation								.	.
Template Sequence		I	V	A	V	T	I	.	.	D	E	P	T	A	H	G	Y	Y	G	G	V	V	A	G	P	P	F	K	K	I	X	G	G	S	L	N	I	L	G	I	S	P	T	K	P
Template Known Secondary structure								.	.					S	S								T															T	T				S	S
Template Predicted Secondary structure								.	.
Template SS confidence
		530	.	.	.	.	.			.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions