Job Description P02919 Confidence 100.00% Date Thu Jan 5 10:57:35 GMT 2012 Rank 2 Aligned Residues 575 % Identity 27% Template c3dwkC_ PDB info PDB header:transferase Chain: C: PDB Molecule:penicillin-binding protein 2; PDBTitle: identification of dynamic structural motifs involved in2 peptidoglycan glycosyltransfer Resolution 3.10 Å

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		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	N	N	R	Q	F	G	F	F	R	L	D	P	R	L	I	T	M	I	S	S	P	N	G	E	Q	R	L	F	V	P	R	S	G	F	P	D	L	L	V	D	T	L	L	A	T	E	D	R	H	F	Y	E	H	D	G	I	S	L	Y	S	I	G	R	A	V	L	A	N	L	T	A	G	R	T	V	Q	G	A	S
Query Conservation
Alig confidence																							.	.
Template Conservation																							.	.
Template Sequence		Q	D	P	I	P	A	K	I	Y	D	K	N	G	E	L	V	K	T	L	D	N	.	.	G	Q	R	H	E	H	V	N	L	K	D	V	P	K	S	M	K	D	A	V	L	A	T	E	D	N	R	F	Y	E	H	G	A	L	D	Y	K	R	L	F	G	A	I	G	K	N	L	T	G	G	F	G	S	E	G	A	S
Template Known Secondary structure					B							T	T	S								S	.	.	S		B						G	G	G	S														G	G	G	T	T												T	T	T	T	T	T	T	S		S	S	S	S	S
Template Predicted Secondary structure																							.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	T	Q	Q	L	V	K	N	L	F	L	S	S	E	R	S	Y	W	R	K	A	N	E	A	Y	M	A	L	I	M	D	A	R	Y	S	K	D	R	I	L	E	L	Y	M	N	E	V	Y	L	G	Q	S	G	D	N	E	I	R	G	F	P	L	A	S	L	Y	Y	F	G	R	P	V	E	E	L	S	L	D	Q
Query Conservation
Alig confidence																																																					.	.	.	.
Template Conservation																																																					.	.	.	.
Template Sequence		T	L	T	Q	Q	V	V	K	D	A	F	L	S	Q	H	K	S	I	G	R	K	A	Q	E	A	Y	L	S	Y	R	L	E	Q	E	Y	S	K	D	D	I	F	Q	V	Y	L	N	K	I	Y	Y	S	.	.	.	.	D	G	V	T	G	I	K	A	A	A	K	Y	Y	F	N	K	D	L	K	D	L	N	L	A	E
Template Known Secondary structure																	S		S	S																S													S	B		S	.	.	.	.	T	T	B	B	S									T				S	T	T
Template Predicted Secondary structure																																																					.	.	.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.					.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.												.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	L	L	V	G	M	V	K	G	A	S	I	Y	N	P	W	R	N	P	K	L	A	L	E	R	R	N	L	V	L	R	L	L	Q	Q	Q	Q	I	I	D	Q	E	L	Y	D	M	L	S	A	R	P	L	G	V	Q	P	.	.	.	.	.	.	.	.	.	.	.	R	G	G	V	I	S	P	Q	P	A	F	M
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																											.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	Y	L	A	G	L	P	Q	V	P	N	N	Y	N	I	Y	D	H	P	K	A	A	E	D	R	K	N	T	V	L	Y	L	M	H	Y	H	K	R	I	T	D	K	Q	W	E	D	A	K	K	I	D	L	K	A	N	L	V	N	R	T	P	E	E	R	Q	N	I	D	T	N	Q	D	S	E	Y	N	S	Y	V
Template Known Secondary structure								G	G	G	S						T	T	T																			T	T	S	S									T	T	S		S	G	G	G						T	T	G	G	G						T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.						.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Predicted Secondary structure														.	.	.	.	.
Query SS confidence														.	.	.	.	.
Query Sequence		Q	L	V	R	Q	E	L	Q	A	K	L	G	.	.	.	.	.	D	K	V	K	D	L	S	G	V	K	I	F	T	T	F	D	S	V	A	Q	D	A	A	E	K	A	A	V	E	G	I	P	A	L	K	K	Q	R	K	L	S	D	L	E	T	A	I	V	V	V	D	R	F	S	G	E	V	R	A	M	V	G	G
Query Conservation														.	.	.	.	.
Alig confidence														.	.	.	.	.																																		.	.	.	.	.
Template Conservation																																																				.	.	.	.	.
Template Sequence		N	F	V	K	S	E	L	M	N	N	K	A	F	K	D	E	N	L	G	N	V	L	Q	S	G	I	K	I	Y	T	N	M	D	K	D	V	Q	K	T	L	Q	N	D	V	D	N	G	S	F	Y	.	.	.	.	.	K	N	K	D	Q	Q	V	G	A	T	I	L	D	S	K	T	G	G	L	V	A	I	S	G	G
Template Known Secondary structure									T	T	S	S	T	T	S	S	S						T	T	B	T																							S			.	.	.	.	.	S	S	T	T										T	T	T		B							S
Template Predicted Secondary structure																																																				.	.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.						.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.		.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		S	E	P	Q	F	A	G	Y	N	R	A	M	Q	A	R	R	S	I	G	S	L	A	K	P	A	T	.	Y	L	T	A	L	S	Q	P	K	I	Y	R	L	N	T	W	I	A	D	A	P	I	A	L	R	Q	P	N	G	Q	V	W	S	P	Q	N	D	D	R	R	Y	S	E	S	G	R	V	M	L	V	D	A	L
Query Conservation																												.
Alig confidence																												.										.																		.	.	.	.											.	.
Template Conservation																																						.																		.	.	.	.											.	.
Template Sequence		R	D	F	K	D	V	V	N	R	N	Q	A	T	D	P	H	P	T	G	S	S	L	K	P	F	L	A	Y	G	P	A	I	E	N	M	K	.	W	A	T	N	H	A	I	Q	D	E	S	S	Y	Q	V	D	G	.	.	.	.	S	T	F	R	N	Y	D	T	K	S	.	.	H	G	T	V	S	I	Y	D	A	L
Template Known Secondary structure		T	T			T	T	T	S			T	T	T	S					G	G	G	G					T								S		.			T	T	B						S			B	S	S	S	.	.	.	.		B				T	T				.	.
Template Predicted Secondary structure																																						.																		.	.	.	.											.	.
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.		.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.					.	.	.	.	.	.	.	.	440	.			.	.	.	.	.	.	.	.	450	.
		570	.	.	.	.	.	.	.	.	.					580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.			.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
Predicted Secondary structure												.	.	.	.																																		.	.
Query SS confidence												.	.	.	.																																		.	.
Query Sequence		T	R	S	M	N	V	P	T	V	N	.	.	.	.	L	G	M	A	L	G	L	P	A	V	T	E	T	W	I	K	L	G	V	P	K	D	Q	L	H	P	V	P	A	M	L	L	G	.	.	A	L	N	L	T	P	I	E	V	A	Q	A	F	Q	T	I	A	S	G	G	N	R	A	P	L	S	A	L	R	S	V
Query Conservation												.	.	.	.																																		.	.
Alig confidence												.	.	.	.																							.											.	.
Template Conservation																																						.
Template Sequence		R	Q	S	F	N	I	P	A	L	K	A	W	Q	S	V	K	Q	N	A	G	N	D	A	P	K	K	F	A	A	K	L	G	L	N	Y	E	.	G	D	I	G	P	S	E	V	L	G	G	S	A	S	E	F	S	P	T	Q	L	A	S	A	F	A	A	I	A	N	G	G	T	Y	N	N	A	H	S	I	Q	K	V
Template Known Secondary structure			T	T																S		T	T									T	T				S	.	S								T	T		T	T																T	T	T	S						B
Template Predicted Secondary structure																																						.
Template SS confidence
		452	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.		.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530
		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680		.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.															.	.	.	.	.	.	.
Predicted Secondary structure																																							.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	A	E	D	G	K	V	L	Y	Q	S	F	P	Q	A	E	R	A	V	P	A	Q	A	A	Y	L	T	L	W	T	M	Q	Q	V	V	Q	R	.	G	T	G	R	Q	L	G	A	K	Y	P	N	L	H	L	A	G	K	T	G	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	N	N	N	V	D	T
Query Conservation																																							.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																												.						.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.																																		.	.
Template Sequence		V	T	R	D	G	E	T	I	E	.	Y	D	H	T	S	H	K	A	M	S	D	Y	T	A	Y	M	L	A	E	M	L	K	G	T	F	K	P	Y	G	S	A	Y	G	.	.	H	G	V	S	G	V	N	M	G	A	K	T	G	T	G	T	Y	G	A	E	T	Y	S	Q	Y	N	L	P	D	N	A	A	K	D	V
Template Known Secondary structure				S	S	S					.									S														T	T	S	S	T	T	S	T	T	T	T	.	.		S		S	S														T	T					T	T			T	T
Template Predicted Secondary structure											.																																		.	.
Template SS confidence
		531	.	.	.	.	.	.	.	.		540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.			.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
		709	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.							.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.		.	.	.	760	.	.	.	.	.	.		.	.	.	770	.	.	.	.	.	.	.	.	.	780
Predicted Secondary structure																										.	.	.	.	.	.																									.											.
Query SS confidence																										.	.	.	.	.	.																									.											.
Query Sequence		W	F	A	G	I	D	G	S	T	V	T	I	T	W	V	G	R	D	N	N	Q	P	T	K	.	.	.	.	.	.	L	Y	G	A	S	G	A	M	S	I	Y	Q	R	Y	L	A	N	Q	T	P	T	P	L	N	.	L	V	P	P	E	D	I	A	D	M	.	G	V	D	Y	D	G	N	F	V	C	S	G	G	M
Query Conservation																										.	.	.	.	.	.																									.											.
Alig confidence																										.	.	.	.	.	.																									.											.
Template Conservation
Template Sequence		W	I	N	G	F	T	P	Q	Y	T	M	S	V	W	M	G	F	S	K	V	K	Q	Y	G	E	N	S	F	V	G	H	S	Q	Q	E	Y	P	Q	F	L	Y	E	N	V	M	S	K	I	S	S	R	D	G	E	D	F	K	R	P	S	S	V	S	G	S	I	P	S	I	N	V	S	G	S	Q	D	N	N	T	T
Template Known Secondary structure								S	S										S	S			G	G	G	T	T	S								T														S			S								T	T					T	T					T	T	B			S	S	B
Template Predicted Secondary structure
Template SS confidence
		608	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.
		781	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	R	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		688	.	690