Job Description P02919 Confidence 98.80% Date Thu Jan 5 10:57:35 GMT 2012 Rank 68 Aligned Residues 216 % Identity 13% Template c3a3jA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:pbp5; PDBTitle: crystal structures of penicillin binding protein 5 from2 haemophilus influenzae Resolution 2.15 Å

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		467	.	.	470	.	.		.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		L	S	D	L	E	T	.	A	I	V	V	V	D	R	F	S	G	E	V	R	A	M	V	G	G	S	E	P	Q	F	A	G	Y	N	R	A	M	Q	A	R	R	S	I	G	S	L	A	K	P	A	T	Y	L	T	A	L	S	Q	P	K	I	Y	R	L	N	T	W	I	A	D	A	P	I	A	L	R	Q	P	N	G
Query Conservation								.
Alig confidence								.															.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Sequence		P	P	Q	I	T	A	Q	T	Y	V	L	M	D	Y	N	S	G	A	I	L	T	.	.	.	.	.	.	.	.	.	.	.	.	A	L	N	P	D	Q	R	Q	Y	P	A	S	L	T	K	M	M	T	S	Y	V	V	G	V	A	.	.	.	L	K	Q	G	K	I	H	N	T	D	M	V	T	I	G	E	S	A	W
Template Known Secondary structure							S	S							T	T	T						.	.	.	.	.	.	.	.	.	.	.	.			S	T	T	S		B			G	G	G													.	.	.			T	T	S	S		T	T							T	T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template SS confidence
		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.													.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.				.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.					.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.							.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.																			.	.	.	.	.	.
Query SS confidence																								.	.	.	.																			.	.	.	.	.	.
Query Sequence		Q	V	W	S	P	Q	N	D	D	R	R	Y	S	E	S	G	R	V	M	L	V	D	.	.	.	.	A	L	T	R	S	M	N	V	P	T	V	N	L	G	M	A	L	G	.	.	.	.	.	.	L	P	A	V	T	E	T	W	I	K	L	G	V	P	K	D	Q	L	H	P	V	P	A	M	L	L	G	A	L	N
Query Conservation																								.	.	.	.																			.	.	.	.	.	.
Alig confidence																								.	.	.	.																			.	.	.	.	.	.
Template Conservation
Template Sequence		G	R	N	F	P	D	S	S	K	M	F	L	D	L	N	T	Q	V	S	V	A	D	L	N	R	G	V	I	V	V	S	G	N	D	A	T	V	A	L	A	E	H	I	S	G	N	V	P	N	F	V	E	T	M	N	K	Y	V	Q	Q	F	G	L	K	N	T	N	F	T	T	P	H	G	L	D	D	P	N	Q	Y
Template Known Secondary structure		G	G	G		T	T	S							T	T																														S	S															T	T		S	S		B		S	S	S	S					T	T		B
Template Predicted Secondary structure
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		616	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.		.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		L	T	P	I	E	V	A	Q	A	F	Q	T	I	A	S	G	.	G	N	R	A	P	L	S	A	L	R	S	V	I	A	E	D	G	K	V	L	Y	Q	S	F	P	Q	A	E	R	A	V	P	A	Q	A	A	Y	L	T	L	W	T	M	Q	Q	V	V	Q	R	G	T	G	R	Q	L	G	A	K	Y	P	N	L	H
Query Conservation																		.
Alig confidence																		.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	S	A	R	D	M	A	I	I	G	A	H	I	I	R	D	L	P	E	E	Y	K	I	Y	S	E	K	D	F	T	F	N	K	I	K	Q	P	N	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	L	W	D	K	T	I	N	V
Template Known Secondary structure		B																					G	G	G	G							T	T						S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	G		T	T	S
Template Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.																															.	.	220	.	.	.	.	.	.	.
		695	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.				.	.	.	.	.	.	720	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		L	A	G	K	T	G	T	T	N	N	N	V	D	T	W	F	A	G	I	.	.	.	D	G	S	T	V	T	I	T	W	V	G	R	D	N
Query Conservation																					.	.	.
Alig confidence																					.	.	.
Template Conservation
Template Sequence		D	G	M	K	T	G	H	T	S	Q	A	G	Y	N	L	V	A	S	A	T	T	S	N	N	M	R	L	I	S	V	V	M	G	V	P	T
Template Known Secondary structure										T	T	T											T	T												S	S
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions